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On October 23, we will submit Seurat v5 to CRAN, and once accepted it will become the default version for new installs. A few notes on v5 below:

Want to hear about the latest updates/new techniques in single cell and spatial genomics? Check out my lab's eighth annual Single Cell Genomics Day on March 29. Keynotes from IdoAmitLab Jason Buenrostro and Xiaowei Zhuang. Please RT/spread the word! satijalab.org/scgd

What if 1 million scRNA-seq libraries can be prepared within $1k? Here we go 👉 21 million cells from 623 mouse tissues, spanning 5 life stages & 3 genotypes, all in a SINGLE study by ONE remarkable student Zehao Zehao Zhang from our lab Rockefeller University! shorturl.at/epsz7

excited to have been involved in this and congrats to the main authors!

Want to hear about the latest updates/new techniques in single cell and spatial genomics? Check out the full agenda for our Single Cell Genomics Day on Friday, 3/29. All talks will be live-streamed (no registration required) at satijalab.org/scgd

Single Cell Genomics Day starts tomorrow at 10AM ET! Come for the awesome keynotes (Jason Buenrostro , Xiaowei Zhuang, IdoAmitLab) and to learn about our favorite new methods and trends for the field in the last year. All talks streamed on Youtube and satijalab.org/scgd

Thanks to our wonderful speakers, audience members, Alex Cagan, and National Human Genome Research Institute (via Center for Integrated Cellular Analysis) for such an enjoyable #singlecellgenomicsday 2024! After 8 years of SCGD its incredible to see innovation in the field accelerating- see you next year!

I'm so happy to be part of this group of incredibly talented, intelligent, and photogenic group of scientists. Happy #singlecellgenomicsday everyone! Rahul Satija

As my lab develops Seurat, I wanted to share some thoughts on the important Seurat and scanpy package selection preprint from Joseph Rich/Lior Pachter 🧵

Excited to share our Seurat update supporting VisiumHD data from 10x Genomics. We explore and validate the ability of HD to map the spatial localization of individual cell types: satijalab.org/seurat/article…

Having trouble analyzing large-scale #spatialomics data? SEraster, a rasterization preprocessing framework on #Rstats that aggregates cellular information into spatial pixels for scalable analysis, is now published on Bioinformatics! Paper: doi.org/10.1093/bioinf… 🧵👇 1/n

A new Science study presents “Evo”—a machine learning model capable of decoding and designing DNA, RNA, and protein sequences, from molecular to genome scale, with unparalleled accuracy. Evo’s ability to predict, generate, and engineer entire genomic sequences could change the

2025年4月からお迎えした第54回生のプロフィールを公開しました🎉 ※2025年4月時点で在籍・進学先決定者のみ リクルートスカラシップ制度はこれからもよりよい支援の仕組み作りに取り組みつつ、「世界に挑戦し、ずば抜けた活躍をしそうな日本の若者」を応援してまいります。 recruit-foundation.org/news/posts-new…

Interested in single cell genomics but need help getting started? Check out the full agenda for our Single Cell Genomics Day on Friday 4/25. All talks will be live-streamed (no registration required) at satijalab.org/scgd25