Our next Center for Integrated Cellular Analysis Virtual Seminar (12PM on 4/16)

Carol Dalgarno & Longda Jiang use Perturb-seq+Parse Biosciences+Ultima Genomics to perturb signaling regulators across cell lines & infer causal regulatory changes from scRNA-seq/spatial data.

Free registration: nygenome.zoom.us/meeting/regist…

Talk by Mysteriously Unnamed on comparisons of multiplexed in situ gene expression profiling technologies #singlecellgenomicsday

Great talk by Sandra Nakandakari on LIPSTICK- a universally applicable method to record cellular interactions via spatial proximity #singlecellgenomicsday

Thanks to our wonderful speakers, audience members, Alex Cagan, and National Human Genome Research Institute (via Center for Integrated Cellular Analysis) for such an enjoyable #singlecellgenomicsday 2024! After 8 years of SCGD its incredible to see innovation in the field accelerating- see you next year!

As IdoAmitLab likes to quote : '‘Wherever anything lives, there is, open somewhere, a register in
which time is being inscribed.' With Zman-seq, that now includes single cell genomics! Thanks for a wonderful talk!

From Yanay Rosen and Jure Leskovec : A foundation model that universally maps cells across tissues and species! Learn more at : github.com/snap-stanford/…

Tour-de-force talk from Xiaowei Zhuang, demonstrating so many powerful applications of in-situ genomics! Not only identifying and mapping cell types, but also to explore cellular interactions, compare across species, and to characterize 3D genome structure.

Lovely talk from Longda Jiang and Carol Dalgarno on how to build dictionaries perturbations. Highlights work from Nir Hacohen’s immune dictionary (nature.com/articles/s4158…), and our systematic Perturb-seq analysis of signaling regulators (biorxiv.org/content/10.110…)

Really exciting new technology from Caleb Lareau for RNA-based enrichment of rare cell types followed by scRNA-seq. Learn more at: clareaulab.com/perffseq/

wishing you a very merry #singlecellgenomicsday

Beautiful new work from Nikolaus Rajewsky lab on DIY high-resolution and 3D spatial transcriptomics. Learn more at rajewsky-lab.github.io/openst/latest/

Stunning talk from Jason Buenrostro at #singlecellgenomicsday , highlighting how to squeeze TF footprinting insights out of scATAC-seq data, and identifying transcription factors that drive HSC aging.

Thanks Alex for live-illustrating our #singlecellgenomicsday workshop today! You can access the free Youtube livestream at satijalab.org/scgd/

Single Cell Genomics Day starts tomorrow at 10AM ET!

Come for the awesome keynotes (Jason Buenrostro , Xiaowei Zhuang, IdoAmitLab) and to learn about our favorite new methods and trends for the field in the last year. All talks streamed on Youtube and satijalab.org/scgd

What a PERFFect day to share our new preprint!

With Tsion Abay #BobStickels Meril Takizawa Ronan Chaligne (He/Him) and Ansu Satpathy, we introduce PERFF-seq, a new experimental approach to studying rare cells with scRNA-seq via transcript-specific enrichment. biorxiv.org/content/10.110… 1/n

Our Single Cell Genomics Day - highlighting our favorite new sc/spatial methods - starts Friday at 10AM ET!

The most common question we get: is this open to anyone? Yes! Talks are free and live-streamed (no registration required) on Youtube and satijalab.org/scgd