1/n Just in time for #ATS2024 on the 1st #SingleCell Atlas of the peripheral immune system in IPF is OUT! “Single-cell profiling reveals immune aberrations in progressive idiopathic pulmonary fibrosis” atsjournals.org/doi/abs/10.116… below main points 👇🏼 #IPFImmuneCellAtlas

Discover the future of 3D-omics! Our perspective aritcle explores how tissue clearing and AI with single-cell omics could revolutionize understanding of entire organs & organisms. Read the full article: nature.com/articles/s4159…

The genetic risk factors for susceptibility to Covid are markedly different from flu Nature Genetics nature.com/articles/s4158…

Watch the AT2 epithelial cell protruding, squeezing, elongating & migrating b/w Alveoli in bleomycin-injured🐭Lung!!!👹 👉45% AT2 cells become motile 3-to-6 days post-injury Video GFP+ AT2 (green) tdT+ cell membrane (red) LCE-PHATE pipeline to analyze cell morphogenetic +

Out today in nature! I am thrilled to share our work on the PARIS immune system in its final published form. Huge thanks to my mentor, Kevin Corbett Kevin Corbett, and my teammates. See the thread below in comment section for a quick summary! nature.com/articles/s4158…

Microbial messengers: nucleic acid delivery by bacteria Trends in Biotechnology by Alison Heggie Teresa Thurston and Tom Ellis cell.com/trends/biotech…

Look how the leading causes of death in the US have changed over the past 4 years JAMA jamanetwork.com/journals/jama/…

Comparative Evaluation of SAM2 and SAM1 for 2D and 3D Medical Image Segmentation: Performance Insights and Transfer Learning Potential Researchers from the University Health Network and the University of Toronto have comprehensively evaluated the Segment Anything Model 2 (SAM2)

Cell tracking analysis made easier... Estibaliz Gómez de Mariscal, PhD Joanna Pylvänäinen Guillaume Jacquemet &co present #CellTracksColab, a transformative solution for #CellTracking analysis, combining cutting-edge computational methods with a user-friendly interface #PLOSBiology plos.io/3WEqOIr

As a coffee person, I’d opt for a coffee machine, but not De Longhi, one has to do better with that money..

It was great to work with Nature Methods on this piece about foundations models for cell biology, while we are not there yet, the future is bright. Effective training of these models guided by tasks and evaluations that are non trivial with careful benchmarking against existing

Analyzing cell differentiation in organoids this past week & really enjoying watching these minicolons grow #timelapse #microscopy

1. This summer I've been thinking a lot about "cognitive load" which is term that has multiple definitions but for me means something like "the amount of processing, analysing, thinking, & deciding I can do in a day before my brain stops working" here's a short thread about that

Researchers present a method for creating vascularized liver #organoids that can accurately mimic fibrotic and normal tissues for drug screening. journals.sagepub.com/doi/10.1177/20… Learn more :Organoid News

What inspired our work on targeted protein degradation in bacteria? 🦠💊 👉check out this journal club highlight of the Clausen Lab paper discovering that arginine phosphorylation marks bacterial proteins for degradation

🔬 Looking for validated anti-ECM antibodies? Check out our latest antibody list curated from the Human BioMolecular Atlas Program (HuBMAP) Human Reference Atlas #HRA Organ Mapping Antibody Panels #OMAP on the Matrisome Project Portal: sites.google.com/uic.edu/matris….

The Rishi Sunak Govt is spineless in standing against authoritarian regimes, yet Keir Starmer is shameless | Government dropped free speech law after universities feared for China interests telegraph.co.uk/politics/2024/…

SBME and Djavad Mowafaghian Centre for Brain Health are hiring an Assistant Professor (Tenure Track) in Neuro Bioengineering to lead a collaborative and convergent research program at the interface of engineering and molecular/cellular neuroscience. Learn more: bit.ly/3AJTbxB

SNAP-tag2: faster and brighter protein labeling biorxiv.org/content/10.110…