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Our essay in Nat Cell Bio: "Bringing computation to biology by bridging the last mile" We argue to shift resources/rewards towards creating user-friendly software to bridge computation and biology-it yields huge returns! Shantanu Singh Free author link: rdcu.be/dv82F

Excellent opinion piece from Anne Carpenter, PhD and Shantanu Singh. We need both resourcing and incentive changes to drive the development and maintenance of high-quality software for biomedical research: nature.com/articles/s4155…

🎂In this issue of our 25 year anniversary: Anne E. Carpenter (Anne Carpenter, PhD) & Shantanu Singh (Shantanu Singh) offer a Comment on bringing computation and biology together! #computerscience #biomedicalresearch 👉🏻rdcu.be/dwrTi nature.com/articles/s4155…

I’m cooking up a startup! The first startup idea to meet my criteria in over ten years, since Recursion. We will focus on targeting tumor ecosystems using machine learning and data science. Please get in touch if you might like to be involved! news.mit.edu/2024/mit-facul…

The same is true for logistic regression. Which is perhaps not surprising because it’s the same subject.

We have published our work on analysis of Cell Painting with weakly-supervised learning, a lot of interesting stuff came along the way, I am very thankful to Juan C. Caicedo Anne Carpenter, PhD Shantanu Singh Beth Cimini 🔬💻 📊 Peter Horvath and all the contributors nature.com/articles/s4146…

** Understanding Biology in the Age of Artificial Intelligence ** arxiv.org/abs/2403.04106 Almost 2 years ago, a philosopher, a biologist, two chemists, and I met for dinners at Clare Hall Its culminated in this paper bringing all our ideas together, and UBAI 2023

I’m thrilled to announce the Massachusetts Life Sciences Center awarded $1.2M to the OASIS Consortium (organized with HESI & Shantanu Singh)! With 20+ industry partners, we will explore Cell Painting, transcriptomics, and proteomics for decision-making in liver toxicology.

Second, we're hiring a summer (+?) software intern! Due to reqs of the funding program, you must be a current student, as well as work onsite in MA (+ have US work permission). Details here: forum.image.sc/t/software-eng… . Should be a fun chance to hang with our team! (3/3)

Internship at the Broad on-site in Cambridge MA! - develop methods to interpret microscopy images - apply deep learning - work at the interface of computer science and biology - ~6 months starting June 2024 - BS/masters/PhD student or recent grad Pls RT! broad.io/CSInternship

Fun news! Delighted that thanks to @mariana_deniz , we now have the BioimagingGuide available in Spanish - please do check out es.bioimagingguide.org ! She goes on our list of translation superstars with Martin Schätz (Czech) and mario cruz (Portuguese). ¡Muchísimas gracias Mariana!

The Devarajan Lab opens Stony Brook Medicine in Micro & Immuno, June 2024! Join our respiratory immunology research group (thedevarajanlab.com). We're seeking research associates & postdocs. RT appreciated. Grateful to so many UMass Chan Medical School for the journey-it truly took a village!

SyzOnc has opened in Philly's B+labs! We aim to target matrix-rich tumors by combining advanced computational and biological technologies from my lab at Broad and Karin Eisinger's at Penn. Thrilled to announce Tim Considine as our new CEO 🚀 We are aligned against cancer!

How to pick a problem. Today in Cell. 1/53 cell.com/cell/fulltext/…

Just one week until the Machine Learning for Drug Discovery (MLDD) event in Vienna, Austria! With a stellar line-up of speakers: @lucycolwell37, Institute for Protein Design, Debora Marks, Thore Graepel, Krishnaswamy Lab , Shantanu Singh & Žiga Avsec .. guiding us through the most exciting

We're hiring! We are seeking an exceptional postdoc associate to help us work on solving the antibiotic resistance crisis, details and apply here: broadinstitute.avature.net/en_US/careers/…

Check out CellPainting Gallery from Erin Weisbart, Shantanu Singh and colleagues, a publicly available collection of Cell Painting datasets with granular dataset descriptions and comprehensive documentation. @tuesdaystitches Shantanu Singh nature.com/articles/s4159…

Postdoc positions available! Carpenter-Singh lab Broad Institute of Harvard and MIT Cambridge MA USA $70,000 (more with years of experience post-PhD) flexible start date See next post for project details... Pls RT! More here/apply: docs.google.com/document/d/1R5…

Sam Altman seems to think AI can replace the role of cancer researcher in the future. STAT spoke with computational biologist Shantanu Singh about the idea. trib.al/wJSOUCx