Saswati Karmakar (@saswati_karmaka) 's Twitter Profile
Saswati Karmakar

@saswati_karmaka

NCI K00 Fellow and postdoctoral researcher studying pancreatic cancer development and metastasis at @LabWinslow @Stanford ; @UNMC Alum

ID: 1472735497965346819

calendar_today20-12-2021 01:09:26

25 Tweet

111 Followers

294 Following

Arjun Raj (@arjunrajlab) 's Twitter Profile Photo

It's been great meeting with postdocs about the faculty position application process! Put together some collected thoughts on the process here. Main thing I've noticed: work on describing your research and *why it's important*. Concrete examples within. docs.google.com/document/d/1Ye…

Laura DeLong Wood (@lauradelongwood) 's Twitter Profile Photo

New preprint from our group in collaboration with Denis Wirtz, led by Alicia Braxton and Ashley Kiemen. We report 3D genomic mapping of human pancreatic tissue, allowing quantification of number and size of PanINs with assessment of genetic relationships. biorxiv.org/content/10.110…

Anirban Maitra (@aiims1742) 's Twitter Profile Photo

#OpenAccess in Cancer Discovery from PascaLab timofran Filip Bednar Rogel and Blondy Center for Pancreatic Cancer Analysis of donor pancreata defines the transcriptomic signature and microenvironment of early neoplastic lesions aacrjournals.org/cancerdiscover… Unique partnership with Gift of Life Michigan enabled this data

#OpenAccess in <a href="/CD_AACR/">Cancer Discovery</a> from <a href="/Pasca_Lab/">PascaLab</a> <a href="/timofran1/">timofran</a> <a href="/Fil_Bednar/">Filip Bednar</a> <a href="/UMICHpancreas/">Rogel and Blondy Center for Pancreatic Cancer</a> 
Analysis of donor pancreata defines the transcriptomic signature and microenvironment of early neoplastic lesions
aacrjournals.org/cancerdiscover…
Unique partnership with Gift of Life Michigan enabled this data
Cancer Cell (@cancer_cell) 's Twitter Profile Photo

Online Now: Simultaneous targeting of PD-1 and IL-2Rβγ with radiation therapy inhibits pancreatic cancer growth and metastasis dlvr.it/Sn9v8c

Vinod BalachandranMD (@thevinodlab) 's Twitter Profile Photo

1. ENTER #mRNAvaccines for #pancreaticcancer! Long-term #PDAC survivor story PART3. "Do #PDACs REALLY have vaccine neoantigens (NAs)"? (aren’t they lowly mutated?) If each patient = own NAs, how do you vaccinate? Maybe mRNA? But how? nature nature.com/articles/s4158… 👇🏽 [1/32]

Michael Pflüger (@pfluger_michael) 's Twitter Profile Photo

Excited to share our systematic review and meta-analysis on cyst fluid biomarkers in pancreatic cysts. Many thanks to Kevin Jamouss, Elham Afghani, Anne Marie Lennon, Aatur Singhi, MD PhD , Laura DeLong Wood for the great collaboration! sciencedirect.com/science/articl… 🧵1/4

Anirban Maitra (@aiims1742) 's Twitter Profile Photo

Predicting Long-term Disease-free Survival After Resection of #PancreaticCancer A Nationwide Cohort Study from DPCG journals.lww.com/annalsofsurger… No fancy nomogram needed - small sized tumors, cleanly resected, with no lymphovascular or perineural invasion, no major

Graham Heimberg (@gheimberg) 's Twitter Profile Photo

Ever analyze a scRNAseq dataset and wonder if a specific cell state has been seen before? And if so, where in the human body? Under what conditions? Well, now you can use our lightning fast SCimilarity search and foundational model for that! ⚡️🔎🧬 biorxiv.org/content/10.110… (1/11)

Ever analyze a scRNAseq dataset and wonder if a specific cell state has been seen before? And if so, where in the human body? Under what conditions? Well, now you can use our lightning fast SCimilarity search and foundational model for that! ⚡️🔎🧬 biorxiv.org/content/10.110…  (1/11)
Anirban Maitra (@aiims1742) 's Twitter Profile Photo

#AACRPan23 kicks off with Yeh Lab giving the welcome remarks. 700 attendees (!!) making this the largest meeting ever & 350 posters highlighting the best of #PancreaticCancer research. Welcome everyone!! Chris Iacobuzio Rosie Sears Rick Buck AACR

#AACRPan23 kicks off with <a href="/YehlabUNC/">Yeh Lab</a> giving the welcome remarks. 700 attendees (!!) making this the largest meeting ever &amp; 350 posters highlighting the best of #PancreaticCancer research. 
Welcome everyone!! 
<a href="/ciacobu/">Chris Iacobuzio</a> <a href="/SearsRosie/">Rosie Sears</a> <a href="/Rick__Buck/">Rick Buck</a> <a href="/AACR/">AACR</a>
Saswati Karmakar (@saswati_karmaka) 's Twitter Profile Photo

What a great opportunity to network with and get advice from esteemed scientists! Looking forward to round 2 of Career Roundtables session tomorrow during lunch at #AACRpan23

Saswati Karmakar (@saswati_karmaka) 's Twitter Profile Photo

Fantastic session on Big Data & Metastasis #AACRPan23. 1. Using computational tools to infer changes in TME @FertigLab 2. Use of UNMC RAP Lab for spatial mapping of transcriptomic heterogeneity in metastasis Anirban Maitra 3. Big picture summary of PC genomics by Steve Gallinger

Fantastic session on Big Data &amp; Metastasis #AACRPan23. 1. Using computational tools to infer changes in TME @FertigLab 
2. Use of <a href="/RAPlabUNMC/">UNMC RAP Lab</a> for spatial mapping of transcriptomic heterogeneity in metastasis <a href="/Aiims1742/">Anirban Maitra</a> 
3. Big picture summary of PC genomics by Steve Gallinger
Saswati Karmakar (@saswati_karmaka) 's Twitter Profile Photo

Fantastic past few days at #AACRPan23 ! So much exciting #PancreaticCancer science, such great inspiration, and meeting old friends Sohinee, Seema, and Nirakar from University of Nebraska Medical Center. Wonderful platform for exchanging ideas and forming collaborations! Katie Hanson Kevin Gulay @Bgarg14

Fantastic past few days at #AACRPan23 ! So much exciting #PancreaticCancer science, such great inspiration, and meeting old friends Sohinee, Seema, and Nirakar from <a href="/unmc/">University of Nebraska Medical Center</a>. Wonderful platform for exchanging ideas and forming collaborations! <a href="/hanson_kathrynj/">Katie Hanson</a> <a href="/kcmgulay/">Kevin Gulay</a> @Bgarg14
Anirban Maitra (@aiims1742) 's Twitter Profile Photo

New preprint from Monte Winslow's Lab Stanford Cancer Institute Modeling the genomic complexity of human cancer using Cas12a mice biorxiv.org/content/10.110… Ability to rapidly generate #LungCancer #PancreaticCancer with multiple tumor suppressor gene losses driven by Cas12a-directed guides (Smad4,

New preprint from <a href="/LabWinslow/">Monte Winslow's Lab</a> <a href="/StanfordCancer/">Stanford Cancer Institute</a> 
Modeling the genomic complexity of human cancer using Cas12a mice
biorxiv.org/content/10.110…
Ability to rapidly generate #LungCancer #PancreaticCancer with multiple tumor suppressor gene losses driven by Cas12a-directed guides (Smad4,
Saswati Karmakar (@saswati_karmaka) 's Twitter Profile Photo

Do check out this interesting work by Emily Shuldiner on how aging impacts tumor development and suppression of lung adenocarcinoma. Contrary to popular opinion that cancers increase with aging, we demonstrate that age related changes in cells suppress the growth of tumors.

Saswati Karmakar (@saswati_karmaka) 's Twitter Profile Photo

Why cancer risk declines sharply in old age nature.com/articles/d4158… Thrilled to have been a part of this fascinating work by Emily Shuldiner from Monte Winslow's Lab exploring the relationship between #aging and #lungcancer. Thanks Nature News & Views for covering the preprint. Dmitri Petrov

Saswati Karmakar (@saswati_karmaka) 's Twitter Profile Photo

Exciting science by Jackie from Monte Winslow's Lab identifying functional #epigenetic #tumorsuppressive complexes with relevance to human #lungcancer that I am glad to have contributed to!

Anirban Maitra (@aiims1742) 's Twitter Profile Photo

New study in CMGH from Bednar lab Filip Bednar Rogel and Blondy Center for Pancreatic Cancer Mouse models for #PancreaticCancer are affected by the cre-driver used to promote KRASG12D activation cmghjournal.org/article/S2352-… Important if you are using an inducible driver (Ptf1 versus Mist1 or Ela1) for KRASG12D

New study in <a href="/AGA_CMGH/">CMGH</a> from <a href="/BednarLab/">Bednar lab</a> <a href="/Fil_Bednar/">Filip Bednar</a> <a href="/UMICHpancreas/">Rogel and Blondy Center for Pancreatic Cancer</a> 
Mouse models for #PancreaticCancer are affected by the cre-driver used to promote KRASG12D activation
cmghjournal.org/article/S2352-…
Important if you are using an inducible driver (Ptf1 versus Mist1 or Ela1) for KRASG12D
EPC-Europ Pancr Club (@eurpancclub) 's Twitter Profile Photo

‼️IT'S WORLD PANCREATIC CANCER DAY‼️ 💜We fight for our patients with #pancreaticcancer ALL day, EVERY day💜 ⏳ EVERY second matters!!! 🗣️Raise awareness - Share the message 👇👇 europeanpancreaticclub.org/mediacentre/ne… my_UEG European Parliament European Cancer Organisation #WPCD #PancreaticCancerAwareness

‼️IT'S WORLD PANCREATIC CANCER DAY‼️

💜We fight for our patients with #pancreaticcancer ALL day, EVERY day💜

⏳ EVERY second matters!!!
🗣️Raise awareness - Share the message 👇👇
europeanpancreaticclub.org/mediacentre/ne…

<a href="/my_ueg/">my_UEG</a>
<a href="/Europarl_EN/">European Parliament</a> 
<a href="/EuropeanCancer/">European Cancer Organisation</a> 

#WPCD
#PancreaticCancerAwareness
Anirban Maitra (@aiims1742) 's Twitter Profile Photo

If you conduct or use single cell RNA-seq data from both humans and mice in your lab, this preprint releases a very useful tool called scVital. Developed by Doron Betel (with a cameo by Tuomas Tammela) scVital enables cross species interrogation and integration of cell states, and is

If you conduct or use single cell RNA-seq data from both humans and mice in your lab, this preprint releases a very useful tool called scVital. Developed by <a href="/dbetel/">Doron Betel</a> (with a cameo by <a href="/TuomasTammela/">Tuomas Tammela</a>) scVital enables cross species interrogation and integration of cell states, and is