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When applying machine learning to human health data, it is not enough to just improve a metric by another percent. We have to go deeper. In our perspective in Nature Cell Biology, we discuss caveats and biases of human single-cell data analysis: nature.com/articles/s4155… 🧵 1/10

1/ „What is the main bottleneck in deriving biological understanding from spatial transcriptomic profiling?" Cell Systems asked a few of us for comments on this, I think quite cool read here at sciencedirect.com/science/articl…

Come join us for the 3rd LDN Quantitative Immunology Day on 10th of April IIT ! All info and free registration 👉 qimmuno.com/ldnday/

Interested in single cell genomics but need help getting started? Check out my lab's Single Cell Genomics Day on April 25. Talks will feature recent exciting computational and experimental advances and will be live-streamed at satijalab.org/scgd. Please RT/spread the word!

New blog post: "Teaching #omics #methods to LCG UNAM students" Thanks for inviting me Valentina Arias Ojeda and Dr Constance Auvynet ^_^ Blog post is available in both English and Spanish 🇲🇽 #genomics #scRNAseq #Visium #spatialomics @10xgenomics Illumina lcolladotor.github.io/2025/03/07/tea…

Children born extremely preterm are born in the midst of a cytokine storm, its barrier tissues are poorly developed and they require invasive procedures which is associated with high risks of infections and inflammatory complications. Better understanding of how immune cells

Common statistical tests are linear models (or: how to teach stats) lindeloev.github.io/tests-as-linea… I wish I were taught like this.

🚨 Paper Alert 🚨 Absolutely delighted to share our last paper on "spatial mechano-transcriptomics" in Nature Methods👇!! nature.com/articles/s4159…

(1/n) The first preprint from our lab is now out in Nature Genetics! We tried to tackle a key challenge in spatial biology to quantitatively characterizing cellular niches by learning spatial gene programs using NicheCompas led by Sebastian Birk. Paper: shorturl.at/b4Hjk

From great collaborations come great things. Excited to share Segger, the solution to segmentation of spatial transcriptomics (ST) data, with the @StatGenomic and Moritz Gerstung labs, spearheaded by the great Andrew Moorman and Elyas Heidari. biorxiv.org/content/10.110…

Baby given new gene therapy in groundbreaking trial | UCL News - UCL – University College London ucl.ac.uk/news/headlines…

Excited to share our new study revealing the intricate dynamics of pregnancy & postpartum physiology! We analyzed 40M lab tests from 300K pregnancies and 160K women (cross-sectional), we mapped week-by-week changes starting from preconception to months-long postpartum recovery.

We are about to open the ABOVE trial UCLH UCL EGA Institute for Women's Health to find out which type of cerclage (stitch) in the cervix is better at preventing recurrent preterm birth in women who have had a previous caesarean section in labour Tommy's Andrew H Shennan OBE Please RT youtube.com/watch?v=5QEu7n…

Our Master's students from the Computational Biology for Personalised Medicine module  (which I’m proud to co-lead) created this amazing word cloud, capturing their journey and insights. It's incredibly rewarding to support and guide students into #ComputationalBiology!💡🧬

🚨 I am hiring! Join our vibrant team UCL EGA Institute for Women's Health as a Postdoc in genomic research exploring preterm birth, gestational diabetes & ICP. Shape the future of women’s health with us! 💥 🔬 #Genomics #AcademicTwitter #WomensHealth | ucl.ac.uk/work-at-ucl/se…

Genetic therapy gives infants life-changing improvements in sight | UCL News - UCL – University College London ucl.ac.uk/news/2025/feb/…

The International Developmental Mechanics Zoom Seminar Series returns Sep 2025! with new co-organizers Gonca Erdemci-Tandogan and Tara F . A new website live: sites.google.com/view/devmechse…. Dev Mech enthusiasts, please register at this link: docs.google.com/forms/d/e/1FAI…

I’m happy to share that our scCellFie manuscript is finally on bioRxiv — a project that was an amazing opportunity to return to my roots in metabolism! We infer metabolic activity from single-cell & spatial transcriptomics 🧬 Read the pre-print here👇 📄 doi.org/10.1101/2025.0…

🚨New Preprint 🚨 Thrilled to share my second paper from my PhD in the Gabe Galea lab! Developmental Biology & Cancer UCL doi.org/10.1101/2025.0…

📢 Introducing Biomni - the first general-purpose biomedical AI agent. Biomni is built on the first unified environment for biomedical agent with 150 tools, 59 databases, and 106 software packages and a generalist agent design with retrieval, planning, and code as action. This