#sequencen „Als een soort detective kunnen we de bron v/e infectie opsporen. Zo kunnen we bv gerichte maatregelen opstellen tegen de verspreiding van ziekenhuisbacteriën"🏥 leuk achtergrond artikel over het werk van Jordy Coolen Radboudumc NRC Heiman nrc.nl/nieuws/2023/04…

Heiman Jordy Coolen Radboudumc wetenschap en niet onbelangrijk, dit artikel is #OpenAccess :-)

Mooi stukje erfenis aan de medische microbiologie Jordy Coolen !

What it takes to get reimbursed in academia x.com/Figensport/sta…

“We performed genomic analyses to investigate the dissemination of mcr-4 encoding plasmids in livestock animals and humans in The Netherlands” doi.org/10.1093/jacamr… Casper Jamin Antoni P.A Hendrickx #JACAMRNews

Wereldvreemde idioot bestelt drankje bij serveerster die alleen glazen mag ophalen speld.nl/2015/08/05/wer…

Pijnlijk

We're making final additions to ska2 (github.com/bacpop/ska.rust) -- thanks for everyone that's been using it and given feedback! @themaklin has written a tutorial on how to use it to rapidly build a tree for some bacterial genomes: bacpop.org/guides/buildin…

Als Research Analist werken bij een innovatieve en ondernemende vakgroep binnen MUMC+? We hebben weer een vacature beschikbaar. Heb je belangstelling of ken je iemand die mogelijk belangstelling heeft? Delen wordt op prijs gesteld. @MaastrichtU banenrijklimburg.nl/vacature/resea…

Our latest paper on risk factors of new-onset post-infectious irritable bowel syndrome among intercontinental travelers is now available open access in #JTravMed . Kudos to 1st author Jiyang Chan MUMC-MMI and all COMBAT-study collaborators! Check out👇 academic.oup.com/jtm/article/do…

I think we need to talk about how devastating this cancer microbiome refutation paper from Steven Salzberg 💙💛 and colleagues is. It really speaks to how devoid of critical thinking and intellectual depth our glam publishing ecosystem has become. 1/n biorxiv.org/content/10.110…

This is an excellent thread summarizing our paper about the flaws in a major cancer microbiome study; wish I'd written it myself. If you don't have time to read our paper, at least read this thread

V and me are intensively working on Snakemake 8.0. Check out the exciting details here: github.com/snakemake/snak…

1/9 Nieuwe commerciële huisartsenketens zijn voortdurend in opspraak vanwege slechte zorg.

Molecular characterization of MRSA collected during national surveillance between 2008 and 2019 in the Netherlands ift.tt/aNwL3GC

Our latest work in collaboration with MUMC is available online in Emerging Infectious Diseases, entitled: "OXA-48–Producing Uropathogenic Escherichia coli Sequence Type 127, the Netherlands, 2015–2022" wwwnc.cdc.gov/eid/article/29…

📣 The special Conda 23.10.0 release is here. #libmamba is now the default solver in the #conda package and environment manager. 💨💨 conda.org/blog/2023-11-0…

We are honoured that Prof. Dr. Alessandra Carattoli will be the opening speaker in the session of Casper Jamin and I at the Scientific Spring Meeting KNVM & NVMM 2024 on 9 & 10 April 2024 entitled: "Towards understanding bacterial plasmids and antibiotic resistance" #NVMM #KNVM

I am happy to finally announce the release of #Snakemake 8.0! In about half a year, we have modernized large parts of the code base. Most importantly, Snakemake 8.0 introduces a versatile plugin system, redesigned support for external storage, and modernized documentation. (1/n)

Revolution in genome sequencing is here: Genomic surveillance of multidrug-resistant organisms based on long-read sequencing medrxiv.org/content/10.110…