Bioinformatic pipelines

Guten Morgen! 😃

The microbiota associated with a unicellular alga in soil shares taxonomic and functional features with the root microbiota of plants Pepe Flores PalomaD MPIPZ Cologne go.nature.com/3pbFRJK

Taking biology to the next level with laboratory automation

Learning #timeseries can be tough. Here are the 7 #R packages that have helped me learn time series and improve my forecasts. #rstats

Today is an excellent day to back up your data!

This may revolutionize data science: we introduce TabPFN, a new tabular data classification method that takes 1 second & yields SOTA performance (better than hyperparameter-optimized gradient boosting in 1h). Current limits: up to 1k data points, 100 features, 10 classes. 🧵1/6

Gene calling with the power of deep learning. It's time! doi.org/10.1101/2023.0…

A PhD position is open in my group MPIPZ Cologne to work on the interplay between the plant cell wall, innate immunity and the root microbiota! Cool collaboration with Robertas Ursache CRAG. We want you!!! Please apply via the link below👇. Please RT 🙏.

Thinking about the post doc before finishing the PhD x.com/i/status/16288…

Last few days to apply and join the rePLANT doctoral training! Deadline: March 19th. Check out the project open in my group MPIPZ Cologne in collaboration with Robertas Ursache. cofund-replant.eu/?page_id=442. #PhD_position, #PlantSciJobs, #microbiota, #Innate_immunity, #cell_walls, #plants

Extremely happy and proud to present this story (finally): biorxiv.org/content/10.110…

News time: next week I will start as assistant professor for Plant Microbiome Interactions at the University of Amsterdam! 🎉 I am super excited and looking forward to new responsibilities, collaborations, and great science!

If you are interested in bacterial and fungal endophytism, I wrote a short overview of recent findings on microbial and host factors involved, which is now available here sciencedirect.com/science/articl… Thanks @PierreMarcDelau for the invitation!

We have a Postdoc or PhD position available in the field of Plant-Microbe-Interactions from early/ mid next year on Universität zu Köln . If you are interested 𝐚𝐧𝐝 𝐡𝐚𝐯𝐞 𝐞𝐱𝐩𝐞𝐫𝐢𝐞𝐧𝐜𝐞 𝐢𝐧 𝐦𝐨𝐥𝐞𝐜𝐮𝐥𝐚𝐫 𝐠𝐞𝐧𝐞𝐭𝐢𝐜𝐬, pls get in contact. Pls share. Ta!

PhD and postdoctoral positions will be open soon. If you are interested in plant-microbiota research and share the same vision that microbiota holds tremendous translational potential. Please do not hesitate to get in touch. P.S. With a bit of green, my office is ready to GO!3/3

Ever wondered how root apoplastic barriers affect symbiosis and nodule function? Wonder no more! Just read our latest preprint.. some few surprise twists in there also.. ;-) biorxiv.org/content/10.110…

Our new manuscript is out Nature Communications 🎉. Genome-resolved metatranscriptomics reveals conserved root colonization determinants in a synthetic microbiota. nature.com/articles/s4146…. Big Congrats N. Vannier, Fantin Mesny, Felix Getzke, Chesneau Guillaume, Jana Ordon and others MPIPZ Cologne!

Hello world! A 2-year postdoctoral position is available in my group MPIPZ Cologne. If you like microbe-microbe interactions, microbial genetics, and single-cell omics, this position is for you! Apply here -> jobs.mpipz.mpg.de/jobposting/d03… Deadline -> Jan 15th Please share 🙏