GATA4 promotes simple columnar and represses stratified squamous epithelial tissue morphogenesis Battle Lab CBNA ow.ly/JY8f50GFuzR

✨✨New Package✨✨ Happy to announce that I am soft launching my R color palette package {MetBrewer} today! Currently has over 30 palettes inspired by works at the The Metropolitan Museum of Art and expanding! Download Instruction and Palettes here: bit.ly/3GDIj1N #r4ds #dataviz #rstats

Like this cover depicting RNA pol II and chromatin as roller coaster!

For everyone who needs to hear this today: OpenAcademics #phdchat PhD Voice - Independently Run #phdchat #PhdLife #phdchat #AcademicChatter #AcademicTwitter (Also, this is my first illustration 😊)

On his last day as @NIHDirector, we want to #ThankYouDrCollins for his service. As the longest serving appointed Director, he has steered the country’s largest medical research agency with a calm hand, a scientific mind, & a deep commitment to the well-being of all Americans.

We're happy to release our new issue! ow.ly/4ECS50IKoZP

Our BayesPrism paper, led by the incredibly talented Tinyi Chu, is finally published! BayesPrism accurately infers both cell types *and* gene expression in each cell type from bulk RNA-seq data using scRNA-seq. nature.com/articles/s4301…

Vertical sleeve drives intestinal stem cell fate toward enteroendocrine cells through bile acid signaling: insight.jci.org/articles/view/…. Great work led by @DarleenSandoval and team, so pleased to collaborate. Congrats to Ki-Suk and all co-authors! JCI insight Amy YH Hung Kieran Koch-Laskowski, PhD

This `anno_GO_keywords()` function should be very useful. It automatically applies GSEA (ORA) on each gene list and adds word cloud annotation from GO keywords to the gene expression heatmap. See example at github.com/jokergoo/Keywo…

Kudos to my amazing post-doc, Amy Hung, on leading this outstanding work, now out as a pre-print: biorxiv.org/content/10.110… Amy YH Hung Cornell Research & Innovation Cornell University College of Veterinary Medicine

New version of our comparison of transformations for single-cell data is on biorxiv.org/content/10.110… 🥳🎉 We completely revised the paper. Across three benchmarks, we show that, despite its theoretical shortcomings, no transformation consistently outperforms log(y/s + 1) 🤯

Praveen, Praveen Sethupathy you have been an amazing mentor! 💯 I cannot thank you enough for your support and guidance over the past 5 years. Goodbyes are always bittersweet, but those good memories I had in your lab will last forever🌟

🙏🙏Please RT? 🙏🙏 Multiple positions available in the Verzi Lab Join a great team of colleagues Post Doc | Senior Research Scientist | Lab Manager | Organoid Core Facility Director verzilab.org A range of salaries available, consistent with experience.

We've been working on Seurat v5 for two years and are excited to share it with you soon! In a webinar w/10x Genomics and Science Magazine on 3/29, I'll introduce new methods to analyze spatial/multimodal datasets that scale to tens of millions of cells: view6.workcast.net/register?cpak=…

1/ False belief: I need to learn fancy machine learning stuff or algorithms for computational biology. Reality: most of us will only need to learn the data skills to answer biological questions. Find the roadmap below 👇 🧵

After a long and unsuccessful search for a statistical inference and regression textbook at the right level for our PhD students, I finally decided to write up my lecture notes as a book. The book is publicly available if you are interested: mattblackwell.github.io/gov2002-book/

Dr. Praveen Sethupathy ’03, professor of physiological genomics, has been named as the next chair of the Department of Biomedical Sciences at #CornellVet. He will assume the role in October 2024. Congratulations, Praveen Sethupathy! 👏 vet.cornell.edu/news/20230627/…

A great resource: Genome-wide enhancer-gene regulatory maps link causal variants to target genes underlying human cancer risk buff.ly/3ZA3uwL

✨✨ New Package ✨✨ Happy to announce that I am soft launching another R color palette package, {MoMAColors} today! Currently has 35 palettes based around artwork at MoMA The Museum of Modern Art. Download Instruction and Palettes here: github.com/BlakeRMills/Mo… #r4ds #dataviz #rstats

Congrats to Amy YH Hung! She is soaring now as a principal scientist in the translational bioinf group Bristol Myers Squibb. Special thanks to Jason Spence for the excellent collaboration and the Cornell University SCP! Cornell University College of Veterinary Medicine @VillanJon Cornell Research & Innovation doi.org/10.1186/s12864… #intestine #miRNA