Michael Vinyard Michael Vinyard | Modeling single-cell dynamics using stochastic generative models based on neural differential equations #AACR23

Excited to share our latest work dissecting a CD69 enhancer at base resolution out in @cellgenomics today cell.com/cell-genomics/… w/ Brad Bernstein, Nauman Javed, @fadinajm and everyone in the team~

Running an AI x BIO HACKATHON this month with OpenBioML Hugging Face LatchBio. 🧬💻 - remote, GPU's & API's provided. Help me share this with any software engineers or bio friends you think are interested in joining. SIGN UP below👇 hackathon.bio

A tremendous privilege to be able to work with and learn from this team

1/6 A little thread to celebrate this milestone! Our SIMBA manuscript has finally seen the light of day, after a journey of more than 2 years. It's been an intense ride, but we're thrilled with the result.

Amazing talk by Luca Pinello on the new CRISPR-CLEAR tool! #Regsys #ISMBECCB2023 Conference, @ISCB #pinellolab #CRISPR

💥 I am thrilled to announce that Dictys (<δίκτυον), our tool to reconstruct dynamic GRNs from single cell multiomics data, is now published in Nature Methods ! A big thanks to Luca Pinello, Lingfei Wang , Daniel Bauer & Ting Wu for the enormous effort we put together on this!

So exciting to see these papers now published, an incredible team work. A huge thank you to our collaborators and co authors🙏🏻🎊🍾

Congrats, team!

Remarkable to see that our discoveries over 15 years ago would enable such tremendous advances for sickle cell disease and thalassemia!!! Incredible to think that the final sentence of our 2008 paper would be prophetic (science.org/doi/10.1126/sc…)... statnews.com/2023/11/16/u-k…

Is binarization of scATAC-seq data really necessary? The conclusion from our analysis is that a quantitative treatment is in fact beneficial. Now out in Nature Methods! gagneurlab Fabian Theis nature.com/articles/s4159… Many additions since the preprint 👇(1/n)

Thank you! I have been so lucky to have such great mentors.

I am grateful for such a nice day. This was a great way to conclude this journey. Thank you!

Congratulations, Dr. Michael Vinyard!! 🎓🎓🎓 Harvard University Broad Institute Gaddy Getz

The PyTorch documentary was a fantastic watch youtube.com/watch?v=rgP_LB…