Ocean Genomics announces a $100,000 grant program to advance treatments for rare diseases. Apply by March 16th for access to its advanced transcriptome analysis and biomarker platform and support: hubs.li/H0HnkYN0 #RareDiseaseDay #translationalresearch #rnaseq #biomarkers

“Ocean Genomics’ expertise in AI and computational method development, together with Geninus’ translational experts and access to data is a powerful combination. Read more about the partnership: hubs.li/H0JR3RJ0 #biomarkers #RNA #immunotherapy

Thank you to Edith Perez M.D. for joining Ocean Genomics’ scientific advisory board. Edith is a world-renowned translational researcher and cancer specialist. Meet the rest of the board: hubs.ly/H0J-X1-0 #translationalresearch #biomarkers #rnaseq

Check out the growing WABI 2020 #wabi2020 thematic series at the journal Algorithms for Molecular Biology BMC. More extended journal versions of great WABI 2020 papers will be added over the coming weeks. biomedcentral.com/collections/wa…

Try txome. ai, an AI-driven transcriptome analysis and biomarker discovery platform, free for 30 days with no-risk. Sign up is easy and takes less than 2 minutes. Get started: hubs.li/H0MjDW80 #RNAanalysis #genomics #transcriptomics #drugdevelopment #drugdiscovery

HiTSeq 2021 Program is now announced at hitseq.org #hitseq2021

If you attended #ISMBECCB21 but missed our Phillip Compeau education talk on teaching intro CB Ray and Stephanie Lane Computational Biology Dept., you can check it out here: ismbeccb2021.showcare.io/lessons/teachi…

If you’re interested in genome graphs, check out Yutong Qiu’s (Ray and Stephanie Lane Computational Biology Dept.) #ISMBECCB21 paper on the connection between genome graphs and string compression: doi.org/10.1093/bioinf…

If you want to evaluate RNA-seq tools on large collections of data, Laura Tung’s (Ray and Stephanie Lane Computational Biology Dept.) work on selecting representative samples from the SRA, published at #ISMBECCB21, will be helpful! doi.org/10.1093/bioinf…

The next winner of a Bioconductor award 2021: @CSoneson ! Congratulations Charlotte!!!

If you’re using minimizers to sketch a genomic sequence, you should read Hongyu Zheng’s and Guillaume Marçais’ #ISMBECCB21 work on polar sets to generate minimizer sketches that are specific to particular sequences. doi.org/10.1093/bioinf…

Check it out! tinyurl.com/tbzt87cr Ocean Genomics has been awarded a grant from the Chan Zuckerberg Initiative for an amazing new internship program here at Ocean! Thank you CZI Science for supporting DEI programs!

I'm delighted to speak about our work at Ocean Genomics, Inc. on using transcriptomics and AI for drug discovery at the upcoming 20th Precision Medicine World Conference Precision Medicine World Conference #PMWC21 pmwcintl.com/east/speakers/

Spatial transcriptomics meets complex analysis – our new method Belayer models spatial gene expression in layered tissues, now published in Cell Systems. Work led by Cong Ma and Uthsav Chitra with Shirley Zhang. 1/6 authors.elsevier.com/a/1fxla8YyDfj7…

Ocean Genomics is delighted to partner with Accenture to bring improvements in transcriptomics for drug discovery to biopharma clients at scale. oceangenomics.com/news/accenture…

🎉Exciting News!🧬Ocean Genomics and Geneyx were awarded a BIRD Foundation grant to develop cutting-edge multi-omic software that combines DNA and RNA to improve structural variant detection, disease diagnosis, and drug target identification! tinyurl.com/yu32288j

Great thread on bulk RNA quantification! It's based on some of the simulation ideas from the paper by Steven Salzberg 💙💛, Ales Varabyou & Mihaela Pertea (ncbi.nlm.nih.gov/pmc/articles/P…). We wrote another preprint at the time that expanded on & supported that analysis biorxiv.org/content/10.110….

A big thanks to all the letter writers, collaborators, and students. Hopefully, we can continue to do the impactful work!

If you’re interested in Hi-C and genome graphs, check out our new methods for more accurate Hi-C contact matrix creation exploiting genome graphs. doi.org/10.1101/2023.1… Yihang Shen, Lingge Yu, Yutong Qiu, Tianyu Zhang

If you are interested in genomic sketching or minimizers, check out our preprint [arxiv.org/abs/2311.03592] that provides some interesting results, conjectures, and computational evidence about minimum decycling sets of the de Bruijn graph with Guillaume Marçais & Dan DeBlasio