Conserved Pseudoknots in lncRNA MEG3 Are Essential for Stimulation of the p53 Pathway: Molecular Cell cell.com/molecular-cell…

Bi-objective integer programming for RNA secondary Structure prediction with pseudoknots by Audrey Legendre #BNLF17

Don't get tied up in pseudoknots!
Project ideas for the coolest computational #RNA #hackathon are due Friday!

Travel grants avail for #RNA 2020 ppl

--> hackseq.com <--

#Bioinformatics The RNA Society Jr RNA Scientists RNA Bioscience Initiative | CU Anschutz Yale Center for RNA Science and Medicine RNAcentral R-Ladies Vancouver BF Francis Ouellette

#RNA Framework v2.5 released - Streamlined analysis of #SHAPE / #DMS -MaP, SHAPE/DMS-seq experiments, windowed #folding , #pseudoknots support, automatic tuning of slope/intercept folding parameters, and much more! goo.gl/qhNsP1

'DesiRNA: structure-based design of RNA sequences with a Monte Carlo approach'

It 'considers a comprehensive array of constraints, ranging from secondary structures (including pseudoknots) and GC content'

biorxiv.org/content/10.110…

1)MicroRNA-146a-5p, Neurotropic Viral Infection and Prion Disease (PrD).
2)mRNA Vaccine teaches our cells how to make protein
3/4)Pseudoknots in prion protein mRNAs confirmed by comparative sequence analysis and pattern searching

#coronavirus #clotshot #grapheneoxide #vaccine

Biotite 0.25.0 provides new tools for structure analysis: Measure nucleic base stacking, create dot-bracket notations, identify pseudoknots, calculate PEOE partial charges and more! Below you can see the charge distribution in a molecule, created with Matplotlib. #bioinformatics

An algebraic language for RNA pseudoknots comparison bmcbioinformatics.biomedcentral.com/articles/10.11… #bmcbioinformatics

Prediction of RNA secondary structure including pseudoknots for long sequences ift.tt/2WAsnvZ #bioinformatics

OK, Markus Deserno, you asked what led me to write a paper on pseudoknots and alpha helices. Why would I, as a membrane biophysicist, be interested in whether a structure misfolds if you start from one end vs. the other? Here is a thread! 1/n

How is the function of #biomolecules impacted by #riboswitches and pseudoknots? Our Mathematical Biocomplexity division studies the topological complexity of interacting systems in the hopes of gaining insight into #genes with complicated structures. ow.ly/bBcZ50D0Ajk

Positive and negative evolutionary information to predict conserved RNA structure including pseudoknots, triplets, and alternative helices.

CaCoFold
(Cascade variation/covariation Constrained Folding)

website eddylab.org/R-scape/
repo github.com/EddyRivasLab/R…

New and timely research findings on molecular architecture of SARS-CoV2 RNA from the Wang lab:
mdpi.com/1999-4915/12/1…
DREEM of pseudoknots and bulged stem-loops. Congrats, Jingxin!

Chemical probing data for 4600 Eterna player-designed #RNA sequences is now publicly available in the RNA mapping database rmdb.stanford.edu for #datascience #ML needing a large dataset of #pseudoknots to train 3D prediction algorithms.

Conserved Pseudoknots in lncRNA MEG3 Are Essential for Stimulation of the p53 Pathway dlvr.it/RBZnHq

Ignacio Labari from Argentina 🇦🇷 and a member of #RiaBio is bringing us a fascinating session on Day 2 of the conference: 'A music-inspired codification of ncRNAs with pseudoknots.' 🎶🧬📚 #Bioinformatics #RiaBio 2023 #ScienceInnovation

Formation of frameshift-stimulating RNA pseudoknots is facilitated by remodeling of their folding intermediates academic.oup.com/nar/advance-ar…

mdpi.com/2073-4425/14/1… New manuscript in MDPI investigating non-B nucleic acids structures in SARS-CoV-2 genomes. We identify and discuss the involvement of inverted repeats, G-quadruplexes, and pseudoknots in SARS-CoV-2 biology. Thanks for the invite Di Antonio Research Group

Work from Dr Andrii Slonchak, Alex Khromykh lab published in Nature Communications examines structural features of 3’UTRs in classical insect & dualhost #flaviviruses (cISF/dISF). Elaborate SHAPE data show c/dISF have multiple xrRNAs and dISF contain novel pseudoknots
nature.com/articles/s4146…

Nandan Gokhale There’re plenty of pseudoknots.