Watch our #TutorialVideo that guides you through the #Jupyter #ColabNotebook containing our #OpenAccess #MERFISH #MouseBrain Receptor Map:

hubs.ly/Q01VYntb0

#DataVisualization #SingleCell #SpatialAnalysis #DeckGL #observable_jupyter #UMAP #SCANPY #ComputationalBiology

Embedding cells from Observable notebooks in a static JupyterLite website via an in-browser Python kernel powered by Pyodide, thanks to the observable-jupyter library by Thomas Ballinger.

Sounds crazy but it works!🤯

github.com/thomasballinge…

#30DayMapChallenge Day 27- #Heatmap
#MERFISH mouse brain map. The interactive heatmap enables the visualization of gene expression across Leiden clusters and single-cells!
hubs.ly/H0_V5260
#observable_jupyter #deckgl #spatialtranscriptomics @googlecolab Observable

We're excited to share a new tutorial walking users through the Project Jupyter Colab Notebook on #GoogleCloud with Vizgen's #MERFISH Mouse Brain Receptor Map #openscience #dataset ! hubs.ly/H0-CsXL0

#SingleCell #SpatialGenomics #DeckGL #observable #jupyter #SCANPY

#30DayMapChallenge Day 11- 3D
#MERFISH mouse brain map. Points are RNA detected by #MERSCOPE & red shows segmented cells. 3D enables exploration of sub-cellular expression!
hubs.ly/H0--vlt0
#observable_jupyter #deckgl #spatialtranscriptomics @googlecolab Observable

there are other approaches that don't fit into Processing, 'let's see other things. like observable & jupyter notebooks'

Oh man observable-jupyter by Thomas Ballinger is so cool. Look how smoothly this runs on a *cloud notebook* as it's all happening on the front end 🥹⚡️ via Observable cells.

Made w/ Plotly (.js)
github.com/thomasballinge…

#DataScience #ML

Excellent stuff to learn D3 (dataviz lib) on Observable (Jupyter-like JS notebooks), by the author of both tools himself, Mike Bostock. observablehq.com/@d3/learn-d3

Thomas Ballinger Tom Larkworthy Fil Sylvain Lesage Chris Olah Anthropic Observable here we used the observable-jupyter library to embed interactive visualizations in a Jupyter notebook on
Colaboratory and we're working on some fun examples using observable-jupyter-widget using two way Python-JavaScript communications twitter.com/vizgen_inc/sta…

I enjoyed the data visualization tech stack chat.

It has me pondering where quantitative data exploration lives, between Observable, Jupyter, Glamorous notebooks; and Mathematica, Tableau, and business analytics platforms. Very different environments.

youtube.com/watch?v=1LHKQt…

Check out our new Colab notebook and video tutorial for the spatial transcriptomics #MERFISH Mouse Brain Receptor Map #observable_jupyter #deckgl #openscience Colaboratory Project Jupyter

Colab Notebook: hubs.ly/H0-CsXL0
YouTube Tutorial: youtube.com/watch?v=xd9Sk3…

Nicolas Lambert Observable Quarto Thomas Ballinger did some work in observable-jupyter.
github.com/thomasballinge…

Thought of another one: Notebook-first.

Observable, Jupyter Notebooks, etc.

Ben Schmidt / @[email protected] Dominik Moritz trevor manz I wonder if/how this could work with observable-jupyter or observable-jupyter-widget github.com/observablehq/o… and github.com/thomasballinge… (by Thomas Ballinger ). I wonder if there's a way to pass a parquet file from Python to JS?

Aiden Bai will depue An alternative to Idyll is using a component library embedded in some other language (eg Observable, Jupyter widgets). I experimented with porting Idyll to Svelte a few years ago, which works nicely because the two-way binding semantics are very similar. github.com/joshpoll/sid

@[email protected] Nicolas Lambert Observable Quarto Thomas Ballinger The Python observable-jupyter package should already work fine in JupyterLite.

But yes it's probably possible to create a JS kernel for Jupyter(Lite) using the observable runtime.

twitter.com/jtpio/status/1…

Yvan Le Bras Andy Gonzalez Andy Purvis ipbes GEO BON GBIF @ecoevo.social/@gbif UNEP-WCMC Aidin Niamir Björn Grüning Starting with Jupyter notebooks is a great. It will help us to understand each other, how we work respectively, etc. It's also a way to prototype new Galaxy tools. Then we can create something similar to COVID-19 with automated wofklows & dashboard (observable, jupyter, R shiny).

JP Hwang You could try Thomas Ballinger’s observable_jupyter library, which lets you embed Observable notebooks in Jupyter and pass data into them:  github.com/thomasballinge…

Alex Garcia Ian Johnson 💻🔥 Observable Mike Bostock I know, but that’s pretty hard to use right now. And orchestration between JS and wasm is a pain. I’m trying to imagine what something like Observable/Jupyter would look like if it was fully in wasm. No JS involved *at all*.

Etsimme innostunutta ja lahjakasta tekijää. Työkaluja ja työkokemuksia on paljon, emme ole nirsoja. Tässä esimerkkejä: data-analyysi, infografiikka, koneoppiminen, R, Pandas, SPSS, Excel, Access, SQL, QGis, Observable, Jupyter, Colab.