We have a new snakePipes release github.com/maxplanck-ie/s… . #RNAseq #ChIPseq #ATACseq #WGBS #HiC #scRNAseq Docs at snakepipes.readthedocs.io/en/latest/

1. Our new #EvoDevo and Wnt gene regulation paper is out in Science Magazine. We used #ATACseq and #CRISPR to study the evolution and role of cis-regulatory elements (CREs) of a patterning gene in different species of #butterflies . 🧵🧵🧵Check the cover🔥
science.org/doi/10.1126/sc…

Chromatin accessibility profiling in tissue sections by spatial ATAC | Patrik Ståhl Enric Llorens bioRxiv
biorxiv.org/content/10.110… |
#chromatin #spatial #singlecell #atacseq #epigenomics

Our single cell atacseq data and software are now available! support.10xgenomics.com/single-cell-at…, @10xgenomics

Please check out our study using integrated single-cell RNA/ATACseq profiling of mouse mammary epithelial cells, which just came out in Cell Reports. Thanks to 10x Genomics for this collaboration. doi.org/10.1016/j.celr…

Very excited to share our preprint introducing PHAGE-ATAC, a multiomic assay for combined protein and accessible chromatin readout using engineered bacteriophages via 10x Genomics droplet-based single-cell ATACseq. #PHAGEATAC biorxiv.org/cgi/content/sh…

Buckeye butterfly PacBio genome with massive #ATACseq cis-regulatory atlas of wing development. Congrats to Dr. Karin van der Burg for making the cover of Cell Reports with her first paper! cell.com/cell-reports/f…

Open #postdoc position in my lab Clemson University Biological Sciences! #ATACseq , RNAseq, in vivo reporters, and #CRISPR to assess enhancers in facial development and evolution #EvoDevo . Pls RT apply.interfolio.com/75339

Excited to share our recent preprint with multi-regional RNAseq and ATACseq profilings to explore the differences among brain regions and better understand disease heritability. Panos Roussos Roussos Lab biorxiv.org/content/10.110….

I’m so proud and excited to share our work on the chromatin dynamics in Cardiopharyngeal cell lineage, thanks to Dr. Lionel Christiaen (he/him/his) and Keira Wiechecki ⚪🌐🔴🚀 #preprints #atacseq #ciona #combinatorial #logics
biorxiv.org/content/10.110…

#ATACseq and #CRISPR knockouts of #Heliconius color pattern enhancers! Ancient multifunctional enhancers prompt a new look at Larry Gilbert's original shutter model Butterfly Evolution #colsci #evodevo #butterfly pnas.org/content/early/…

If you want to work on an exciting #EvoDevo project integrating extensive #RNAseq , ATACseq and #GWAS data, please apply for a fully funded Postdoc position in my group at the University Goettingen. Visit posnien-lab.net/team/jobs/ for more details.

Thrilled to publish this methods article with Sandra Jiménez-Gancedo, in Frontiers - Cell Biology, about #ATACseq in invertebrate chordates as a tool to explore the non-coding genome. In collaboration with patrick_lemaire and Hector Escriva groups and with the leadership of Jose Luis Gomez Skar

Our preprint on longitudinal sampling of #CLL patients through ibrutinib treatment with #scRNAseq and #ATACseq to monitor response to treatment is finally on #bioRxiv ! biorxiv.org/content/10.110… #preprints

I'm very happy to share that our collaborative study between Department Biology, Chemistry, Pharmacy FU Berlin and Stefan Mundlos & Melvin C Bicomong is finally published online iScience journal.
cell.com/iscience/fullt…
We show the mechano-dependency of BMP9 SMAD-signaling in the vasculature.
#BMP #ATACseq #genomics #vasculature

We have a new preprint!! We investigate the genetics of type 2 diabetes (T2D) with a RNAseq expression dataset from pancreatic islets and FAC sorted beta-cells, and ATACseq data.

biorxiv.org/content/10.110…

Thanks for the awesome swag, Active Motif! #ATACseq

Very excited to announce our cell-type resolved #zebrafish enhancer map based on #singlecell #ATACseq ( #sciATAC ) data! Great work by Alison McGarvey Wolfgang Kopp @dusa_dv and more, led by Scott Lacadie. Thanks to all our colleagues that made this possible!!

biorxiv.org/content/10.110…

PhD opportunity about the epigenetics of aging (RNAseq, ATACseq, Gene regulation). Nefzger team. Excellent team and excellent location. Check it out ! scholarships.uq.edu.au/imb-nefzger-1

Very pleased to announce my first, first co-author paper from my time in @Teichlab, now on BioRxiv biorxiv.org/content/10.110… 🧬🫀

We integrated spatial + suspension (snRNA/ATACseq) data to generate the richest atlas of the adult human heart to date.

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