Filter plotted cells to refine visualizations in Single Cell Portal! Drill down to visualize gene expression for one or more experimental variables. Read about the feature (broad.io/scp-filter-plo…) or dive into the documentation (broad.io/scp-filter-plo…).

Want to explore single cell studies, or publish your own? Check out youtu.be/lclq_6olqqc for a recent overview of Single Cell Portal: search, differential expression, cell filtering, spatial transcriptomics, study creation, public vs. private studies, and more!

Since 5/2020, Single Cell Portal has had: - 582K active users (currently 215K / year, up 42% YoY) - 2.3M page views - 3.7M user searches for studies and genes And we host 76M cells: 48M public, 28M private. Explore, upload, share! singlecell.broadinstitute.org

Exploratory DE results are now available for new AnnData studies! Create a study, upload your AnnData file, then find and visualize differentially expressed genes. singlecell.broadinstitute.org

Very excited to share our pre-print and my thesis work on the postnatal development of astrocyte regional heterogeneity, which includes an integrated dataset of >1.4 million single nuclei transcriptomes in mouse and marmoset brains (now available online)! biorxiv.org/content/10.110…

Check out three new #singlecell studies on molecular cartography in mouse intestine by Toufic Mayassi, Chenhao Li and colleagues in Xavier lab Broad Institute: singlecell.broadinstitute.org/single_cell/st…, singlecell.broadinstitute.org/single_cell/st…, singlecell.broadinstitute.org/single_cell/st…

Single Cell Portal now supports exploring #multiome ATAC data!  Simply upload your #singlecell ATAC fragment data, then visualize and filter it in a genome browser.  Learn more about comparing chromatin accessibility and gene expression: singlecell.broadinstitute.org/single_cell/fe…

Each month, over 22K users from > 160 organizations use Single Cell Portal.  Increase the impact of your science by creating a study at singlecell.broadinstitute.org!

Did you know Single Cell Portal comprehensively validates #singlecell data *before* you upload?  Authors learn of issues in < 10 seconds -- not minutes or hours -- with clear, actionable messages. Click "Create study" at singlecell.broadinstitute.org to try SCP's fast, easy upload. ⚡️

How does gene expression relate to disease mechanisms and gene regulatory networks?  New pathway search and visualization features in Single Cell Portal give insight! Learn more: broad.io/scp-pathways #SingleCell #Biology #GeneRegulatoryNetwork