Contamination detection and microbiome exploration with GRIMER. #Microbiome #ContaminationDetection #InteractiveAnalysis bioRxiv biorxiv.org/content/10.110…

🌳Do you have #hierarchical data that you want to classify? Try out the hierarchical algorithms and metrics implemented in our Python library, #HiClass! Now available Journal of Machine Learning Research! Fabio & Niklas Köhnecke jmlr.org/papers/v24/21-…

🎉Check out our new paper on #secondary #data for #globalhealth published this week The Lancet Digital Health! Hasso-Plattner-Institut Charité - Universitätsmedizin Berlin جامعة الملك سعود World Health Organization (WHO) Philipps-Universität @BIPS_Bremen @UniBremen Universität München Universität Erfurt Universität Potsdam Freie Universität Robert Koch-Institut

📢 Are you on the job market this year or looking for new opportunities, whether full-time, internships, postdocs, etc? We would love to promote your work. Write a tweet describing your work and tag us (Trustworthy ML Initiative (TrustML)), and we will retweet you! :)

…including the poster of my colleague Ferdous who is presenting at #ICLR23 about „Immunity score calibration based on vaccination rebalancing“ 👩🏻‍🏫💪 Renard Lab

I had a great time talking about "Enforcing Right to Explanation: Technical Challenges, Solutions, and Opportunities" at the Responsible AI workshop at Carnegie Mellon University University. Slides: tinyurl.com/dtbpemv3 Key takeaways summarized👇. More details in the thread👇 [1/N]

Good morning at day 3 in Valencia for #ViBioM2023! Keynote speaker Bernhard Renard Renard Lab is getting us into the #machinelearning mood to talk about viral #surveillance in the first session. Glad to see so many people up after the great conference dinner!

Heute Besuch am ⁦Hasso Plattner Institut Hasso-Plattner-Institut⁩. Gute Nachricht: Hier werden weltweit erstklassige KI Modelle in der Medizin entwickelt. Schlechte Nachricht: fast nur mit ausländischen Daten, da die Deutschen Daten nicht vorliegen. Das werden wir ändern.

Excited to share new work with ShToneyan! CREME (Cis-Regulatory Element Model Explanations), a suite of in silico perturbation experiments to uncover the rules of gene regulation learned by large-scale DNNs trained on functional genomics data. biorxiv.org/content/10.110…

We are looking for a postdoc with a strong backbround in bioinformatics and/or machine learning to join our lab! Contact me if you are interested.. or retweet.. or just come and talk to me #ISMBECCB2023 next week in Lyon! I will be at the iRNA COSI 26-27 July

Today #ISMBECCB2023 started in Lyon and the Renard Lab is here with some exciting talks and posters! Stay tuned 🥖

Stop by, happy to chat! 😊🦊

Are you still using Kraken or Centrifuge for long-read taxonomic classification? Or are you using large Bloom Filters for biological data analysis? If the answer is yes, you should attend the talk from Jens-Uwe Ulrich at 2:10 p.m. in the Lumière Auditorium #ISMBECCB2023 #HiTSeq23

...aand it's a wrap again! See you next time in Turku 🇫🇮 or Montreal 🇨🇦! #ISMBECCB2023 🦊

Announcing our Neurips 2023 workshop "XAI in Action: Past, Present, and Future Applications"! xai-in-action.github.io Apart from the usual submissions, we have a special "demo" track to demo s/w libraries, visualization tools, applications of ML w major XAI component Ddl :22 Sept

Join us 2mrw @⚡️XAI-in-Action : Past, Present & Future Applications⚡️ workshop NeurIPS Conference for an exciting discussion on how far we've come, the current state & future of XAI ! Bonus: Live Demos! Submit ur ❤️‍🔥 panel questions: app.sli.do/event/6e2A95V2… 🔗xai-in-action.github.io

We had a blast welcoming so many of our alumni and friends to DACS&Friends (Data Analytics and Computational Statistics & Future Research Ideas and ENDeavours Symposium) a few weeks back. Thank you so much to all the dear speakers and attendees for making the event so special!✨

Do current genomic language models (pre-trained on whole genomes) learn a foundational understanding of biology in the non-coding region of human genomes? A new evaluation led by Amber Tang suggests not yet! 1/N paper: biorxiv.org/content/10.110…

Conference season has truly started for us! ✨ Here are our presenters from ECML PKDD in Vilnius, Lithuania catching up with presenters on the way to ECCB2026 Geneva, Switzerland in Turku, Finland 🚀

Our collaborator Alexander Rakowski presented „Metadata-guided Feature Disentanglement for Functional Genomics“ ECCB2026 Geneva, Switzerland #ECCB2024 Check out the proceedings paper: academic.oup.com/bioinformatics…