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Accurate And Versatile 3D Segmentation Of Plant Tissues At Cellular Resolution biorxiv.org/cgi/content/sh… #biorxiv_plants

It's not ilastik, but it's still ours. If you need membrane-based segmentation for LM, check it out! Really fun collaboration with Maizel Lab @maizel-lab.bsky.social and other great people who study plant morphodynamics plantmorphodynamics.com

Plant Science Research Weekly: plantae.org/plant-science-… Cotton genomics, Selaginella expression map, Primary vs lateral root responses, reciprocal cybrids, effect of herbivory on temp responses, PlantSeg for 3D image segmentation, and mitigating As in urban gardens.

Chances are you know this already, but we think it is a VERY nice and concise video about Corona Virus infection and what the world experiences in this very moment. youtu.be/BtN-goy9VOY Kurzgesagt

VOLUNTEERS: The German Center for Infection Research (dzif.de/en) contacted us. They forwarded requests they have received from German hospitals and MDs. Check it out, and see if you can help: discourse.data-against-covid.org/t/request-for-… #COVID19 #HELP #VOLUNTEERS

After over over two intense months, our preprint on Sars-CoV-2 antibody testing is out. We measure antibody binding based on Immunofluorescence, using high-throughput microscopy and image analysis to make the approach scalable. biorxiv.org/content/10.110…

Scientifically, this is new territory for us, but pixels are pixels everywhere, so it came together surprisingly fast. Many thanks to CIID_Heidelberg for giving us the opportunity to contribute to this important work.

"Kinderstudie": preliminary results out now. Ca. 5000 children and one parent were tested in Germany's southwest. Out of these, around 60 had antibodies against SARS-CoV-2: klinikum.uni-heidelberg.de/newsroom/vorla… 1/3

First ever 3D plant cell atlas of Arabidopsis ovules. Cheers to @RacheleTofanel1 Kay Schneitz and other coauthors. Its never possible without support of #MGX team Soeren Strauss Richard Smith Lab 🇺🇦 and #plantseg team Lorenzo Cerrone Adrian Wolny and the Plant Morphodynamics

So cool to study morphogenesis of a complex organ in full 3D and with cellular resolution. Meticulous work by Athul Vijayan and @RacheleTofanel1. Great collaboration with Soeren Strauss, Richard Smith Lab 🇺🇦, Lorenzo Cerrone, Adrian Wolny, ilastik Team and Anna Kreshuk's Lab, #FOR2581 biorxiv.org/content/10.110…

Pflanzenzellen mit 3D-Bildern analysieren: Heidelberger Wissenschaftler an Entwicklung neuer Bildverarbeitungssoftware beteiligt uni-heidelberg.de/de/newsroom/pf… #PlantSeg

Uni Heidelberg (finally) featured PlantSeg our tool to segment plant cells in tissues. uni-heidelberg.de/en/newsroom/an… Publication: elifesciences.org/articles/57613 Lorenzo Cerrone Adrian Wolny Plant Morphodynamics

Our 3D ovules are out in eLife. Thanks to all great collaborations. @RacheleTofanel1 Soeren Strauss Richard Smith Lab 🇺🇦 Lorenzo Cerrone Adrian Wolny Plant Morphodynamics elifesciences.org/articles/63262

Always great to see such a thorough comparison for a real use case (spoiler: our Adrian Wolny 's PlantSeg is doing pretty good)

The explosive work of FOR281 members Hay & Tsiantis labs MPIPZ Cologne on seed dispersal in Cardamine has been featured on Smarter Every Day ! How cool 🌿💥 youtu.be/MUaTOoVmg1Q?t=… paper: bit.ly/2TXz1uQ

So happy to see our work with @guijacquemet, Romain F. Laine and Ricardo Henriques in Nature Methods out! I believe the topic is specially relevant for the #BioImageAnalysis community: "Avoiding a replication crisis in deep-learning-based bioimage analysis". nature.com/articles/s4159…

It's a great pleasure to announce that "CellTypeGraph" has been accepted at #CVPR2022! A new ML benchmark at the intersection between geometric learning and developmental biology! Thanks to all for the support Athul Vijayan Tejasvinee Mody Kay Schneitz Fred Hamprecht Plant Morphodynamics

The hackathon is organized by the BioVisionCenter ( Virginie Uhlmann , Lorenzo Cerrone, Ethel Mendocilla Sato & me), NFDI4BIOIMAGE 's Josh Moore , EMBL's Christian Tischer, CEITEC's Vladimír Ulman , scalable minds 's Norman Rzepka 🇺🇦 & Eric Perlman (5/5)

It's great to be at #I2K2024 #i2k and see (almost) everyone in bioimage analysis. If you're interested in OME-Zarrs or what we're doing with Fractal, stop by my poster today! :)