Salaries in industry are ~ 2x higher than in academia after #PhD. This is a huge gap. Many students ask me what to do about their bad advisors and boring PhD time. They love doing #research but have no idea how to stay in academia. My advice these days is simple: 1. Do your

Pretty good job reducing batch effect in #microbiome data by ConQuR in a single line of R code 👌🏻 #RStats #Bioinformatics rdcu.be/davav

Sex is great, but have you ever tried being micromanaged by someone who has no clue what he's doing?

My book is done. I need to write a conclusion to the last chapter and will likely rewrite some paragraphs, but I won't make major changes anymore. So if you're interested in building reproducible analytical pipelines with #RStats, take a look it's free: raps-with-r.dev

We're very excited to share that QIIME 2 is now available on the public Galaxy Project server, cancer.usegalaxy.org, providing an easily accessible graphical interface for #microbiome #bioinformatics. More details at forum.qiime2.org/t/qiime-2-avai…

Want to analyze RNA-Seq data interactively yet reproducibly? Newly refactored iDEP (bioinformatics.sdstate.edu/idep11) is almost ready. Reproducibility features: -Generate code & reports, -Install locally as an R package or via Docker!

For years, Fisheries & Aquaculture's global stock analyses have guided global policy formulation. Our latest effort, #SOFIA2022, presents #BlueTransformation, a vision to advance #aquaticfood production to ensure sustainability & resilience. Check it out 👉 bit.ly/3AzZQsh

Results from GO enrichment are often dominated by one type of terms, often the large ones if you sort by P-value. If you include more terms (top50) and organize them like this, you can find that there are groups of terms related to G1/S & G2/M transition, and response to

Translating the microbiome – what’s the target? - Gastroenterology Great quote - "Diversity analysis alone is an inadequate, non-actionable, misleading and simplistic metric when it is agnostic of the microbial taxa that are gained or lost" #microbiome sciencedirect.com/science/articl…

New blog up! solomonkurz.netlify.app/blog/2023-05-0… In the 5th installment of my series on how to make causal inferences with the GLM and randomized experiments, we analyze count data with Poisson and negative-binomial models, and discuss robust SE's, too. #brms #marginaleffects #tidybayes

The {marginaleffects} 📦 book is now online! 25 chapters on post-estimation analyses and interpretation with #Rstats. The 📖 is full of tutorials, case studies, tips, and technical notes. Please check it out and let us know how we can improve this resource vincentarelbundock.github.io/marginaleffect…

What's the most valuable skills I gained from my phd training? 1. Critical reading and thinking; 2. The ability to quickly gain knowledge and skills for new tasks; 3. R programming (any programming skill actually), allowing me to enjoy a cup of tea and chill during the work.

Knight Lab (UC San Diego School of Medicine / UCSD Engineering) is excited to announce a new release of Greengenes in Nature Biotechnology (nature.com/articles/s4158…). With this release, we provide a single taxonomy and phylogeny unifying 16S and shotgun metagenomic analyses! A thread (1/n)

BREAKING NEWS The 2023 #NobelPrize in Physiology or Medicine has been awarded to Katalin Karikó and Drew Weissman for their discoveries concerning nucleoside base modifications that enabled the development of effective mRNA vaccines against COVID-19.

Explore the Food and Agriculture Organization #GLOBEFISH Chinese #Fish Price Report & discover the latest insights on Chinese fish prices. Based on information supplied by industry correspondents, the report offers guidance on broad price trends. Read more here 👉 shorturl.at/jorFM

radEmu is here! ❤️🐦📈🔥 The StatDivLab's best differential abundance method yet! arxiv.org/abs/2402.05231

Marine #fisheries production grew from 16.8 M tonnes in 1950 to over 80 M tonnes in late 1980s, maintaining production since. Explore more data on fisheries production on the @FAOFish yearbook. It covers 3400+ species items & 26 major areas, since 1950 👉 bit.ly/3wc4GeV

Offering a 5-week machine learning course. It covers algorithm development and fundamental concepts. Focus is on genomics datasets. Lectures are in real-time, with discussion board, feedback on homework, and help showcasing your work on GitHub. Apply here: decipherlifesciences.com/apply

I'm 𝒕𝒉𝒓𝒊𝒍𝒍𝒆𝒅 to be speaking at #useR2024 next week. How to Interpret Statistical Results with the marginaleffects 📦 for #RStats Here’s a pre-recorded video on Youtube in case you can’t make it youtu.be/ANDC_kkAjeM Let me know if you're in Salzburg and want to chat!