Kieran Samuk (@ksamuk) 's Twitter Profile
Kieran Samuk

@ksamuk

Assistant Professor in the EEOB Department @UCRiverside. Studying evolution and recombination using genomics. 🇨🇦🔬🖥️. Also: @ksamuk.bsky.social

ID: 2294753461

linkhttps://www.samuklab.com/ calendar_today16-01-2014 17:10:03

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Kieran Samuk (@ksamuk) 's Twitter Profile Photo
Kieran Samuk
@ksamuk

8 months ago

PSA, since I've now seen problems arising from this: As of Sept 2023, GATK no longer makes missing genotypes explicit in VCFs (i.e. "./." as in the VCF spec). Missing genotypes are instead coded as "0/0" with a DP=0 format field. See attached for examples.

PSA, since I've now seen problems arising from this: As of Sept 2023, GATK no longer makes missing genotypes explicit in VCFs (i.e. "./." as in the VCF spec). Missing genotypes are instead coded as "0/0" with a DP=0 format field. See attached for examples.