Quantifying 3′UTR length from scRNA-seq data reveals changes independent of gene expression nature.com/articles/s4146…

use MEME for DNA motif analysis? try TangerMEME: Biological sequence analysis for the modern age. github.com/jmschrei/tange…

If you ever need to move files around in your directory, #rstats can help do this quickly, especially when you are working with hundreds of files! Here is just one way you might quickly sort and copy files into a new location.

一句话解释 “done is better than perfect ”

Updating !!! Collection(GitHub): Deep Learning and Generative AI for molecules ( small molecules, RNA, peptide, protein, enzymes, antibody, and PPIs) conformations and molecular dynamics (force fields) github.com/AspirinCode/aw…

Biowasm now supports nucmer, the genome/assembly alignment tool from MUMmer. Anyone making a web app can now import nucmer in the front-end to align small genomes or assemblies to each other. Thanks to Thomas Roder for contributing!

How do yeasts resist oxidative stress? We used machine learning to identify gene families that are predictive of ROS resistance across the yeast subphylum. Check out the preprint led by UW–Madison Biochem undergrad Kat Aranguiz and postdoc Linda biorxiv.org/content/10.110…

An overview of DNA damage repair pathways. go.nature.com/3XGFxly

Data Visualization with R datavizs24.classes.andrewheiss.com datavizs24.classes.andrewheiss.com

See our new article in which we developed an Ontology of Yeast Environments.🌱This hierarchical framework allows for new systematic analyses and insights into the evolution, ecology, and diversity of yeasts!💡onlinelibrary.wiley.com/doi/10.1002/ye…

Glad to announce that our (with Dao-Qiong Zheng & Jing Li (李婧)) proposed symposium on #ExperimentalEvolution has been selected for the Molecular Biology and Evolution 2025 conference in #Beijing! Dmitri Petrov will be our invited speaker! Please save the date and consider joining our symposium!

Attn: The abstract submission for the SMBE 2025 conference in Beijing Molecular Biology and Evolution is open now! Submission site: smbe2025.scimeeting.cn/en/web/index/2… Submission Deadline: Jan 30, 2025. Welcome for all abstract submissions, especially for our Experimental Evolution Symposium !!! #evolution

Centromere evolution isn't a sudden switch! Our study shows centromere transitions are a step-by-step process driven by a combination of drift and selection. Discover how the kinetochore interface shapes this gradual change in our new preprint doi.org/10.1101/2025.0…  🧵(1/8)

POST-DOC ALERT: We seek a postdoctoral associate with experience in electrophysiology to lead a 2-year, NSF-funded project examining how isolated turtle neurons regulate membrane currents during anoxia. If interested, either DM or visit slu.wd5.myworkdayjobs.com/en-US/Careers/… Society for Neuroscience (SfN)

We’ll be hosting the Bioinformatics Summer Workshop from August 11–15. The workshop is completely free and held 100% online. If you are interested, please go ahead and register: sites.google.com/view/bioinfowo…

It's been awhile since we posted here, but we have an opening for postdoctoral training! Please apply by 15th August 2025 for full consideration. Here is the ad: hittinger.genetics.wisc.edu/People/Join/po…

I am seeking a highly motivated and enthusiastic PhD student to join my lab in Spring or Fall 2026. If you are interested in genetics, epigenetics, or bioinformatics, please feel free to contact me at [email protected].

Deep Learning for Biology, by Charles Ravarani & Natasha Latysheva A hands-on guide to applying deep learning across DNA, proteins, medical images, and more. Each chapter is a project-driven path into AI-powered biology—covering CNNs, transformers, GNNs, and autoencoders.