Livestream for our free single cell workshop starts tomorrow at 9AM EST. If you're watching online, you can tweet questions using #singlecellgenomicsday, and we'll relay to presenters in the room. See you tomorrow! satijalab.org/scgd/livestream

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The tech for the next decade: promises and challenges in genome biology genomebiology.biomedcentral.com/articles/10.11… … Our #AGBT19 meeting report (with the incomparable Hagen Tilgner / @[email protected]) is now published in Genome Biology. Already cannot wait for next year's (#AGBT20 20TH ANNIVERSARY) AGBT Meeting meeting!

Thanks a lot Rahul Satija and @lionlchristiaen for the opportunity to work and learn from you guys!

Two papers in Cell integrating scRNA-seq datasets across modalities and technologies, including CITE-seq, scATAC, methylation, and spatial data! * LIGER (Evan Macosko): cell.com/cell/fulltext/… * Our Seurat v3 'anchors' (led by Tim Stuart+Andrew Butler): cell.com/cell/fulltext/…

In Situ Transcriptome Accessibility Sequencing (INSTA-seq) biorxiv.org/cgi/content/sh… #bioRxiv

Congratulations👏@wholebrainsuite @jlee8usa

So thrilled to share our tale of complex SV "towers", "chasms", and "typhoons" across nearly 3000 tumor whole genomes, epic effort by Kevin H @xtYao & Julie B w/ @EngIPM Patricia Galipeau Fred Hutch Cancer Center NY Genome Center Bob Darnell (@darnelr.bsky. & bob.darnell@Threads) Nicolas Robine biorxiv.org/cgi/content/sh…

Dear science-matchmaking 💘 twitterati, Recruiting wet and/or dry postdoctoral fellows! We integrate technology development and advanced computation to study somatic evolution, in a unique lab culture of collaboration and creativity (landaulab.org) Pls spread word!

Our latest w/NYGCtech, led by Efi Papalexi- we perform a pooled CRISPR screen with scRNA+protein readout (ECCITE-seq) to identify regulators of immune checkpoints. We also introduce mixscape, a toolkit to analyze and visualize single-cell screens: biorxiv.org/content/10.110…

We are very excited to announce the fellowship and please help us spread the word!

Excited to announce the newest preprint from the Tilgner lab - biorxiv.org/content/10.110… We always knew that splicing is messy, especially at the single cell level, but we found that there's some method to the madness 1/n

Excited to attend ICML Conference in person #ICML2022. Do check out our workshop of computational biology at Friday. (Pic 1 causality and deep learning tutorial and pic 2,3 generated by AI DALLE2 given key words Fuji film photo and painting of Baltimore)

Congrats to Steve Niu on becoming a Doctor! Learned so much from this computational biologist extraordinaire! Lots of good science to come and good luck Genentech ! Pls also check out his paper published just this week nature.com/articles/s4158…

Congratulations! This resource is highly valuable for training image segmentation models.

Very excited to share our latest work from the Dan Landau, where we uncover the spatial determinants underlying macrophage heterogeneity and self-renewal in breast cancer. biorxiv.org/content/10.110…

Thrilled to unveil our study on cell-cell interactions in tumor environments. Leveraging organotypic models and spatial multiomics, we're decoding macrophage biology and spatial cues that shape their behaviors – with an eye on potential therapeutics. Cheers to Nir & team! 🙌

We're hiring a computational intern to work on large-scale scRNA-seq—developing pipelines, integrating datasets, and uncovering biological insights for drug development. Don’t miss out—please share and apply!👇 careers.gene.com/us/en/job/2025… #Internship #Bioinformatics #DrugDiscovery