Thrilled to have presented our proteoVAE - a disentangled Variational Autoencoder for multivariate proteomics analyses - yesterday at #eshg2024 conference in Berlin! On Monday, come meet the amazing Health Data Science Centre at Human Technopole PhD students at the posters session! Human Technopole

very cool work!

Amazing work by Ben Hale! If you want to know how data-oriented and mechanism-oriented stories are shaping immunology today , join me on Monday at 5pm :) amazing science by Snijder Lab & Renato Ostuni

We also adopted a recent unsupervised extension of a classic explainable artificial intelligence (XAI) technique to interpret biologically meaningful dependencies that deviated following a treatment (see in #preprint). 7/9

NimwegenLab Mae Woods Gennady Gorin Arjun Raj The existence of ZI as a "technical artifact" is distinct from divergence from a NB or Poisson dist. This paper genomebiology.biomedcentral.com/articles/10.11… e.g. argues that zero inflation is observed for certain genes & is of Biological origin (& recommends still using a GLM with NB counts w/o ZI).

Come and join my group in Milan and work on exciting spatial transcriptomics, digital pathology and genetics projects! Reach out if you'd like more information :) careers.humantechnopole.it/o/postdoc-in-m…

Beautiful!

Brilliant!

Don’t you think that sometimes you’re just working hard for becoming the SFigures of someone else?

The position is back on the web site: careers.humantechnopole.it/o/group-leader… : Looking for outstanding candidates for a group leader position in computational biology for the Centre of Genomics, Functional Genomics Program. Re-posting appreciated!

Finishing your PhD be like

Hello, hello! All the scRNAseq and ST analysis I have done in my PhD are coming to an end! From October I’ll be scholarship-less and ready for more! I’m into ML/DL/AI for Biomedicine but also considering bioinfo position as a transition phase. Rt appreciated! Pic: fav two slices

What I've always said is: it makes no sense to stamp 10k velocity vectors together on a single UMAP image. If you want reliable results, focus on the velocity of the specific genes you're interested in

Bioinformatics has never been so wild. Sampling Xatardia plant to build and annotate its genome using long read sequencing. Supervised by Sílvia and Roderic Guigó , guided by Clara Pladevall 🎗 and Manel. Centre for Genomic Regulation (CRG) Guigó Lab, LongTREC Andorra Recerca + Innovació

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defo I would read it over and over again 🥰

def cool! nature.com/articles/s4158…

cell.com/cell/fulltext/… 😯😯always wondered about the metabolic side of TAMs! Nice work! I guess that epigenetic rewiring is the key to understand what a cell will do, while the metabolic layer is key to understand what a cell is doing?

My 2 cents: You’re not failing. Work relationships, like any others, are driven by ambition, success, desire, and empathy. Lacking one, they deteriorate. It’s all about balance. science.org/content/articl…

A few years ago I was in a position to do something unique in neuroscience. I had been working with the phenomenal Emily G. Jacobs on menopause and inspired by Laura Pritschet's menstrual study, and I was planning a pregnancy. What if we scanned my brain?? nature.com/articles/s4159…