Interested in building tools based on EggNOG database and The ETE toolkit for analysis and visualization of single cell RNAseq data collected from diverse marine animals? check this offer at @EMBL (Arendt's lab) in collaboration with our group at CBGP. embl.de/jobs/searchjob…

nice use of ETE3 methods for orthology prediction, auto rooting and phylogenomics analysis of newly sequenced wheat gene families: science.sciencemag.org/content/361/64…

Getting ready for my #ISMB2019 presentation (Mon 3pm willie van emmerik). First time talking about my hobby project for years: how to make programmatic viz of HUGE annotated trees possible. Still far from production, but it feels good to explore a 10M nodes tree in real time w/ 7G & 1CPU!!!

thanks for this summary thread yo yehudi stays away from humans! 🏳️‍🌈 !

another summary, thanks BioVis !

#NewsCBGP | CBGP team awarded Chan Zuckerberg grant to support scientific software for phylogenomic analysis 🇪🇸 - cbgp.upm.es/index.php/es/?… 🇬🇧 - cbgp.upm.es/index.php/en/?… #somosUPM

I am very glad to announce that we have been awarded with a grant from CZI Science to support the development of The ETE toolkit. This will boost the release of a new version focused on better tree comparison methods and large tree visualization. CBGP 1/2

After more than a decade developing & maintaining ETE, getting the recognition of essential software in science by CZI Science is making everyone in the The ETE toolkit team a bit happier :) Francois Serra Deng Ziqi Renato alves Ana Hernández CBGP Universidad Politécnica de Madrid INIA-CSIC & more

really excited to see this... well deserved! We have been using The ETE toolkit for rendering trees from IQ-TREE web server

We got a full day tutorial accepted on ETE Toolkit at @eccb2020, which has been transformed in a virtual 3h tutorial. We will try to touch all major features with a bunch real examples. Only intermediate python level required. Registration should be open eccb2020.info/ntbt06-reconst…

Exciting tutorial "Reconstruction, analysis, and visualization of #phylogenomic data with the @ETEtoolkit" to be held in the New Trends in Bioinformatics by ECCB. Register to the #ECCB2020 and have the opportunity to join this tutorial! 👇

Interactive huge tree visualization in The ETE toolkit getting closer. Check out our current online demo: treeview.etetoolkit.org Navigating @ace_gtdb bact tree and complete NCBI Taxonomy is now possible! Awesome work by @jordiburcas w/ the support of CZI Science CBGP

The ETE toolkit @ace_gtdb NCBI @jordiburcas CZI Science CBGP smooth zooming, auto-scaling branch lengths, minimap navigation, topology manipulation, rect & circ views, permalinks to scene region, search.. Next major steps:merging with The ETE toolkit 's viz grammar for programmatic use & seq.alg support. @jordiburcas CZI Science CBGP

A call to our community: New discussion forum, and upcoming Hackathon supported by CZI Science If interested in participating (in any way), please get in touch so we can better plan the logistics. github.com/etetoolkit/ete…

Today we started our first hackathon! 5 days , 14 people coding together at CBGP + a few other online. Our main goal is to boost the release of the new ete4 version, which will include a new visualization system able to explore huge trees! #ETE4 funded by CZI Science

We are starting our third #ETE4 hackathon day. Yesterday was very productive, with ppl making progress in the visualization of large gene phylogenies with taxonomic info, biogeographic data, HyPhy bindings, phylogenetic profiling, tree handling, and much more.

Course announcement - Phylogenomic data analysis and visualization using ETE Toolkit. Where: Madrid, Spain. When: Nov 13-17th, 2023 Registration (free): bit.ly/ete_workshop Topics: programmatic reconstruction, analysis, handling and visualization of phylogenetic trees.

Another step in our goal to build a phylogenomics framework that works well with large datasets: TreeProfiler, a handy tool by Deng Ziqi that can map/profile any kind of data against huge trees. Tree + TSV file = auto viz with The ETE toolkit v4.0 biorxiv.org/content/10.110…

Deng Ziqi The ETE toolkit One of the coolest features of #TreeProfiler IMO, is its ability to automatically compute consensus/summary information for internal nodes, which integrates seamlessly with the new interactive zooming and auto-colapsing features of the #ete4 tree visualization engine. Deng Ziqi

Checking this upcoming ETE course