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UCSC Genome Browser Learn more about the stratifications used here and more in our recent paper at nature.com/articles/s4146…

📖 Read more on how these advancements are reshaping genomics research: annualreviews.org/content/journa…

Heading to Cold Spring Harbor to present a poster on benchmarking average nucleotide identity! "ANI, are you OK? Challenges for k-mer-based estimation of evolutionary distances" at Biological Data Science #cshldata24 !

Biological Data Science starts tonight! Use #cshldata24 this week for all of your posts 🧬

Great talk by Fabio Cumbo from Cleveland Clinic at #biodata24 on MetaSBT for characterizing microbial genomes via hierarchical structure of sequence bloom trees. The ability to update the index and adding new genomes is amazing! github.com/cumbof/MetaSBT… #cshldata24

Cool idea of universal single-isoform genes (BUGSI) to assess RNA data as part of the SQANTI ecosystem. A great talk by AnaConesa Conesa Lab at #cshldata24 SQANTI-Sim: link.springer.com/article/10.118… #biodata24 SQANTI3 for quality control long-read transcriptome github.com/ConesaLab/SQAN…

Looking for a postdoc in machine learning, data science, AI? We are launching a postdoc program at JHU! Candidates in foundations/methods or applications welcome! Please share/RT! (For my friends & followers, yes this includes genomics and health applications)

Check out our new work led by Ashton Omdahl discussing matrix factorization across GWAS, accounting for sample overlap. Factors with varying polygenicity, enrichment for cell type / developmental stage... Ashton is speaking at #biodata24 today! biorxiv.org/content/10.110…

Great talk by Katharine Jenike at #biodata24 on investigating paralog evolution in tomato and eggplant using a pangenomic approach, revealing widespread introgressions biorxiv.org/content/10.110… Amazing synteny viz with github.com/jtlovell/GENES… #cshldata24

Excited to share our work on splice site prediction! Stop by poster #66 tonight to learn more about Splam and OpenSpliceAI. 🔗Read the paper here: doi.org/10.1186/s13059…. #biodata24

Proud moment :D. I think this is the first study that uses both TRUST4 (for TCR assembly) and T1K (for HLA genotyping).

Interesting talk by Benjamin Parks at #biodata24, showing how creative ideas in data compression can improve performance of single cell analysis github.com/bo1929/krepp deployed in Seurat satijalab.org/seurat/article… achieving upto 60x speedups compared to ArchR/SnapATAC2 #cshldata24

Have you checked out our behind-the-paper blog post on FastOMA? Read it here go.nature.com/4a3V9q3 I’ll give you a quick intro to orthology, a bit of history of orthology methods, and the story of how FastOMA came to life—and how it works!

How are different #orthology methods related and how well do they perform? Read about this and a new orthology benchmark in "New developments for the Quest for Orthologs benchmark service" academic.oup.com/nargab/article…

Exciting News! 🚀 We want to hear from YOU! 📢 Take a moment to share your experience in biomedical data analysis and help shape the future of AnVIL. Complete the State of the AnVIL Community Poll here and enter to win a gift card: bit.ly/sota2025

Anyone know what's going on with AcademicJobsOnline (AcademicJobsOnline)? Their site has been down for more than a week.