
Roshni Biswas
@roshni__b
Computational Biology PhD Student | @MDC_Berlin & @ChariteBerlin, previously @DanaFarber
ID: 932935584577761285
21-11-2017 11:35:51
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Some big news: I’m absolutely delighted to announce that I will be starting my group this fall in the Computational and Systems Biology Program at Memorial Sloan Kettering Cancer Center in New York City! clareaulab.com 1/






Congratulations to Cara Haymaker, Edwin Parra & Sacha Gnjatic on our recent article showing association of immune response and immunotherapy benefit in squamous cell lung cancer using Multi-Omics Lung-MAP Lipschultz Precision Immunology Institute Icahn School of Medicine at Mount Sinai MD Anderson Cancer Center pubmed.ncbi.nlm.nih.gov/38277235/

What a PERFFect day to share our new preprint! With Tsion Abay #BobStickels Meril Takizawa @ChaligneRonan and Ansu Satpathy, we introduce PERFF-seq, a new experimental approach to studying rare cells with scRNA-seq via transcript-specific enrichment. biorxiv.org/content/10.110… 1/n

The choice of whether to use Seurat or Scanpy for single-cell RNA-seq analysis typically comes down to a preference of R vs. Python. But do they produce the same results? In biorxiv.org/content/10.110… w/ Joseph Rich et al. we take a close look. The results are 👀 1/🧵






Excited to share the white paper for the IGVF Consortium, supported by National Human Genome Research Institute Deciphering the impact of genomic variation on function rdcu.be/dSZdm

Happy to announce that CCLONE is out on bioinformatics 🥳 Our method identifies cancer cells based on noisy & sparse SNVs called directly from scRNA-seq data. Congrats to Valérie Marot-L. Sergi Beneyto Calabuig Benedikt Obermayer @larsplus Dieter Beule Laleh Haghverdi! doi.org/10.1093/bioinf…

Our second Lab Retreat was full of science, team building and fun with some furry friends :) We are excited about new projects & ideas in the Haghverdi Lab. Stay tuned for upcoming posts and publications!


