🔥The 9th Round of Easy Loan, Earn $40 Reward is in progress❗️ ⏰ Promotion Period: January 15th - Feburary 15th, 2025 👉 Register now and check more details at gate.io/campaigns/358

There is a new tool on BioIcons to turn any protein (in PDB format) into a 2D vector illustration in SVG format. You can upload any PDB file or import from PDB, AlphaFoldDB or ESMFoldDB. Feedback welcome :) bioicons.com/pdb2vector/

So thrilled for the new chapter at VIB.AI and KU Leuven ! Beyond excited to contribute to their mission by diving deeper into the mysteries of the protein universe, working together to unlock new biology. Looking forward to what’s ahead in beautiful Leuven🚀🔬

Started teaching again! This time decided to try use #claude (Anthropic) and CodeSandbox for hosting to implement an interactive GREMLIN (Potts) model (w = coevolution, b = conservation) to show students how you go from MSA to contacts! 9kssnq.csb.app

Nice press release from Biozentrum, University of Basel University of Basel about our recent Cell papers on diatom pyrenoids and the amazing PyShell🥧🐚, a key part of the global #carbon cycle🌍♻️. Can this discovery help with Carbon Dioxide Removal #CDR? Only if we reduce emissions first!🛢️🚫

📢The future Pereira lab is hiring! We will start at VIB.AI in February 2025 and are looking for a postdoc to join and kick-start our team 🤓 If you want to leverage AI and large networks to explore and understand the protein universe 🌌, check below! jobs.vib.be/j/93314/postdo…

Thanks a lot for having me, it was a lovely, interactive audience!

Thrilled to receive a NWO Nieuws Vidi grant!🚀We will push the boundaries of #ML in drug discovery via ‘chemistry-centered’ innovation.💪🏻 Huge thanks to my colleagues TU Eindhoven, the awesome Molecular Machine Learning team and my incredible partner for their support! tue.nl/en/news-and-ev…

Diego del Alamo biorxiv.org/content/10.110… we've got numbers in the paper - PLINDER-time is Jan 2021 cutoff PLI systems (+/- same used as by recent AF3 clones and I assume NP3). depending on definition of leakage ~93% of posebusters datapoints are leaked. PoseBusters mostly checks if you can

Iambic Therapeutics Impressive results on PoseBusters v2 dataset, what time cutoff did you use and are you planning to share the predicted structures for evaluation?

Are you struggling to model your ligand into x-ray crystallography or cryo-EM density? Trying to dock a novel ligand into a well-studied target but just cannot get the pharmacophore position correct? Running a virtual screening and want to optimize your hit rate? (1/4)

A new binding affinity prediction benchmark for sequence-based models from the Bioptic Company team is now available on Polaris! Learn more: polarishub.io/datasets/optic…

Save the date for next Friday! It's always a pleasure to be hosted by the great Michael Bronstein Bruno Correia and VantAI !

We are hiring (resharing appreciated)! Given a few recent successful grant applications (I got my SNSF Starting Grant 🚀), we are extending the LIAC (LIAC at EPFL) team and have multiple openings (PhD/postdoc) for 2025. Are you interested in #AI4Science and machine learning

End of year notes from #PLINDER team! It's been an incredible year for datasets and benchmarks for the #ML/#CompChem/#CompBio community. Super grateful for the positive responses, constructive feedback and contributions! It's just the start! More in 2025! plinder.sh/blog/updates

Some end of the year updates and future outlook including about the new flexible-docking focused split and leaderboard the team has built for MLSB @ NeurIPS

Join us tomorrow to hear Peter Škrinjar talk about 🌹Runs N' Poses🌹! Curious to hear your thoughts on how to keep up with benchmarking in this field. More info: bsky.app/profile/peters…

Introducing CAMEO Structures & Complexes - automated weekly blind benchmarking of structure prediction servers. Now with heteromeric and protein-ligand complexes. Join us and register your server now! cameo3d.org