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This groundbreaking paper: nature.com/articles/s4158… by @MarsonLab cited Ma'ayan Lab #ARCHS4. Function predictions for #BTN3A1 with #PrismExp are spot on maayanlab.cloud/prismexp/g/BTN… with suggested role for the mechanism also in autoimmune diseases. Also, #GATA3 is predicted as a key TF.

Summer Research Training Program in Biomedical Big #DataScience in the Ma'ayan Lab Icahn School of Medicine at Mount Sinai ACCEPTING APPLICATIONS FOR SUMMER SESSION 2024 | Application deadline Feb 1 labs.icahn.mssm.edu/maayanlab/summ…

Say hello to #Rummagene available from: rummagene.com. To create it @maayanlab scanned supp. materials of 5.4M #PMC articles to find 642K human gene sets. Sets are served for enrichment, free text, and table title search. Paper is now on biorxiv biorxiv.org/cgi/content/sh…

The new #NIH_CFDE Data Resource Center will create a portal to catalyze user-friendly queries of Common Fund data sets and connect users to Common Fund resources to enable new discoveries only possible by searching across Common Fund data. go.nih.gov/GNIq7yC

We are proud to announce that researchers from Icahn School of Medicine at Mount Sinai and UC San Diego have been awarded an $8.5 million grant to create a data integration hub aimed at accelerating novel therapeutics and cures for diseases within initiatives supported by NIH Common Fund. Read more:

🧬🔍 Dive into the Diabetes & Data Exploration with D2H2! The Diabetes and Data and Hypothesis Hub is a transformative platform unlocking the potential of omics datasets in diabetes research. doi.org/10.1093/bioadv… AviMaayan Icahn School of Medicine at Mount Sinai

Very proud to be part of this work! Thank all the team members for all the hard work Francesca Petralia Michele Ceccarelli AlexanderLazarMDPhD AviMaayan Cantley Lab Mount Sinai Genetics Hope the findings will help to advance immune therapy for cancer patients!

Rummagene is a search engine for gene sets, created by extracting human and mouse gene sets from supporting materials of >120,000 biomedical research publications: nature.com/articles/s4200… AviMaayan Ma'ayan Lab

On Friday 5/31 @ 1 PM ET, members of the CFDE Workbench will introduce new tools to query the LINCS Program L1000 data and gene expression signatures automatically extracted from NCBI #GEO rummageo.com register: cfde.info

A great talk by AviMaayan and his team on Tuesday at the Mount Sinai Genetics WIP in Computational Biology and Data Science, showcasing their excellent new bioinformatic interfaces, including Rummagene and others.

Join us on Tuesday, June 25th at 1:00 PM ET for a virtual workshop introducing the Playbook Workflow Builder: playbook-workflow-builder.cloud, a new #bioinformatics platform to interactively create #workflows with no coding skills. Registration: mssm.zoom.us/webinar/regist… #genomics #omics

Playbook Workflow Builder: Interactive Construction of Bioinformatics Workflows from a Network of Microservices biorxiv.org/content/10.110…

Want to build #bioinformatics workflows with ease? Learn about the Playbook Workflow Builder & how to create workflows in this virtual workshop on 6/25 at 1PM ET. Learn more: bit.ly/4blDfy6 #DataScience #Biomedicine #DataEcosystem

Join our Virtual Symposium in Big #DataScience on 8/8 @ 10 AM ET where the Ma'ayan Lab trainees in the 2024 Summer Undergraduate Research Training Program in Biomedical Big #DataScience will present their research projects. Register: mountsinai.zoom.us/webinar/regist…

From AviMaayan, Pei Wang, and colleagues: Multiomics2Targets identifies targets from cancer cohorts profiled with transcriptomics, proteomics, and phosphoproteomics: Cell Reports Methods cell.com/cell-reports-m… Icahn School of Medicine at Mount Sinai

The Summer Research Training Program in Biomedical Big #DataScience in the Ma'ayan Lab Icahn School of Medicine at Mount Sinai is accepting applications for summer session 2025! Application deadline is Feb 1. Program details: labs.icahn.mssm.edu/maayanlab/summ…

Our #RummaGEO (rummagene.com) paper is out in Patterns: cell.com/patterns/fullt… Developed Ma'ayan Lab #RummaGEO provides access to 171,441 human and 195,265 mouse gene sets mined from 29,294 NCBI GEO RNA-seq studies uniformly aligned with #ARCHS4 maayanlab.cloud/archs4/

The CFDE Workbench team will showcase the #CFDE information portal (cfde.info), the #CFDE data portal (data.cfde.cloud), and #GeneSetCart (genesetcart.cfde.cloud) at #ASHG2024 #ASHG24. To learn more about the #CFDE visit booth 571. NIH Common Fund Common Fund Data Ecosystem Knowledge Center

Join us on Thursday, January 23 at 2:00 PM ET for a virtual seminar featuring GeneSetCart, a web application for multi-omics AI-driven gene set analysis. Please register in advance for this virtual seminar: maayanlab.cloud/turl/6660bf4c

Join us on Thursday, February 27 at 2:00 PM ET for a virtual seminar featuring ARCHS4, a web resource that streamlines access to over two million uniformly aligned RNA-seq samples from GEO. Please register in advance: maayanlab.cloud/turl/a60f13d9