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Check our recent paper about genomic characteristics of the emerging foodborne pathogen #Escherichia #albertii from lanlabUNSW in @micgenomics. About population structure, #virulence genes distribution, the great concern of #MDR. #plasmids #prophages microbiologyresearch.org/content/journa…

For rapid access to structural information about the variations in #omicron, we (lab of Sean O'Donoghue) have created an info graphic: aquaria.app/omicron Many of the variations are present in structures of #SARSCoV2 or #SARSCoV. Click on the number of structures to view them.

Interestingly the co-occurrence of Q498R and N501Y (see aquaria.app/SARS-CoV-2/S/7…) which probably contributes to better binding between #ACE2 and #SARSCoV2, had been structurally investigated for increasing virulence, before the discovery of #omicron.

Cluster-specific gene markers enhance Shigella and enteroinvasive Escherichia coli in silico serotyping, from Xiaomei Zhang 张晓梅 Michael Payne lanlabUNSW and colleagues in #MGen doi.org/10.1099/mgen.0…

New Australian #bordetella #pertussis #genomics preprint alert! lanlabUNSW Alice Zheng Xu Sophie Octavia biorxiv.org/content/10.110…

—Hey #AI, I'd like to design a way to accurately diagnose >1,900 viral species in <2 hours —OK, here you go nature.com/articles/s4158… Nature Biotechnology Pardis Sabeti Hayden Metsky Broad Institute

first talk in #vizbi2022 #rna session from Athma Pai - explaining mrna splicing and fidelity

Andy Truman PhD Pretty much all of them do (self paper plug bit.ly/3uKHuRU)

ShigEiFinder version 1.3 released! Includes fixes and updates that resolve issues raised in this excellent recent paper by Iman Yassine and Weill François-Xavier nature.com/articles/s4146…. Accuracy now over 92% in routine surveillance! lanlabUNSW #Shigella #EIEC. github.com/LanLab/ShigEiF…

Genomic epidemiology and multilevel genome typing of Australian Salmonella enterica serovar Enteritidis Lijuan Luo, Payne, Wang, Kaur, Rathnayake, Graham, Gall, Draper, Martinez, Sophie Octavia, Mark M. Tanaka, Amy Jennison, Vitali Sintchenko, Ruiting Lan biorxiv.org/content/early/…

Meeting (almost) all our brilliant Australian Pathogen Genomics Program Program partners today for our All Partners Symposium in sunny Sydney!

My latest research on Genomic Epidemiology of Vibrio cholerae O139 is published on Emerging Infectious Diseases journal. Thank you ⁦lanlabUNSW⁩ ⁦Michael Payne⁩ ⁦Dazhi Jin⁩ ⁦UNSW Biotechnology & Biomolecular Sciences⁩ #cholera is my favorite forever 😄 wwwnc.cdc.gov/eid/article/28…

New preprint from lanlabUNSW! biorxiv.org/content/10.110… We describe large and small scale trends in global #Bordetella #pertussis populations using a standardised multilevel genome typing (MGT) nomenclature and public database mgtdb.unsw.edu.au/pertussis/ lanlabUNSW #microbialgenomics

My last chapter of PhD work in lanlabUNSW.

New paper from lanlabUNSW, in EMI_Journal tandfonline.com/doi/full/10.10…. We described the global genomic epidemiology and evolution of B. #pertussis with >6500 isolates using MGT. Michael Payne Alice Zheng Xu Sandeep Kaur Sophie Octavia Public database -> mgtdb.unsw.edu.au/pertussis/. 1/6

How big are the cells? Microorganisms in perspective

Our lab is hiring two Research Assistants. A Computer Scientist and a Biomedical Scientist. Please help us spread the word and apply before Nov. 29th.

Characterising Staphylococcus aureus genomic epidemiology with Multilevel Genome Typing. biorxiv.org/cgi/content/sh… #bioRxiv

Global genomic dissection of antimicrobial resistance in Salmonella Typhimurium biorxiv.org/cgi/content/sh… #biorxiv_micrbio

Just published👍I’m glad to share: Genomic evidence of two-staged transmission of the early seventh cholera pandemic | Nature Communications ⁦lanlabUNSW⁩ #cholera nature.com/articles/s4146…