Our perspective with Leto Peel and Manlio De Domenico just came out on Nature Communications: “Statistical inference links data and theory in network science” We argue how Bayesian inferential methods are essential for a robust network science. nature.com/articles/s4146…

new version of the Met4J library and toolbox for metabolic network analysis

The MetaSaurus project web portal is launched today! metasaurus.fr Very nice consortium to move forward on #ontologies and help #Metabolomics in structuring these data and better integrating resources into the #WebOfData #LinkedData #SemanticWeb

[#Job] We are looking for a postdoc to work on a 3-year project in #LIPME_Phylosym, in Toulouse, to study the physiological and ecological function of specialized metabolites of plant-bacteria symbioses, beginning March 2023. Apply 🔗jobs.inrae.fr/en/ot-16786

I cover this topic in this week's newsletter for those who want to hear more ranting about SHAP (and a good example of where PFI is more useful). mindfulmodeler.substack.com/p/shap-is-not-…

Un poste d’Ingénieur d’Etude en développement pour le calcul scientifique est ouvert au concours dans notre équipe bioinformatique. linkedin.com/posts/j%C3%A9r…

Nice example about the limits of the LLMs

Kind of sucks when you've been telling people publicly that they should abandon UMAPs because they can be misleading and don't provide a faithful representation of the data... and then you look at a UMAP and it's really useful. 1/3

Truly Open AI. @LAION_AI calls for a supercomputer to develop open-source AI, by replicating large models like GPT-4 and exploring them together as a research community. heise.de/news/Open-sour…

Rappel pour nos amis chercheurs et étudiants : il est INTERDIT d'utiliser ce site qui permet d'accéder à tous les articles de recherche gratuitement ! Ce site est souvent bloqué par les fournisseurs internet, il est aussi interdit de contourner le blocage avec cette méthode. 🧵

🤖 #ChatGPT wrote the ‘Discussion’ section of an MDPI paper in the 𝘛𝘰𝘹𝘪𝘯𝘴 journal?! The authors may have failed to remove the “Regenerate Response” label of the button when they copy-pasted ChatGPT's output 🤡 #fail Reported on PubSmear pubpeer.com/publications/D…

LAION Daniel Jeffries Doraemon manga from 1970s Japan that predicted all of this AI stuff :) h/t AK

One of our key sources of human data is no longer fully “human"! We estimate that 33-46% of crowd workers on MTurk used large language models (LLMs) in a text production task - which may increase as ChatGPT and the like become more popular and powerful. arxiv.org/abs/2306.07899

📰Pre-print alert!📰 It is with great pride and excitement that we share the details of our latest AI model, MS2Mol, to unlock nature’s chemical code. Read on to learn more about the tech and how we use it to translate the language of chemistry 🧵👇 /1

I'm happy to share with you the pre-print of Mass2SMILES. Many thanks to Florian Huber for guidance in computational questions and to my supervisor Emmanuel Gaquerel (@egaquerel.bsky.social) for giving me the freedom to explore my ideas. biorxiv.org/content/10.110…

This is huge: Llama-v2 is open source, with a license that authorizes commercial use! This is going to change the landscape of the LLM market. Llama-v2 is available on Microsoft Azure and will be available on AWS, Hugging Face and other providers Pretrained and fine-tuned

Please find our last review published in #TrAC on scaling-up #metabolomics in human and plant research. Special focus on methodological issues, #FAIRData + perspectives on #OneHealth. Thanks to @hajjar_ghina Pujos-Guillot Estelle Metabohub - doi.org/10.1016/j.trac…

Un éditorial de la revue Nature: apprendre à dire "Non" dans nos activités de recherche. Mais c'est aussi valable plus généralement pour la conduite d'une vie bonne! On peut se souvenir de "Eloge du suffisant" par André Gorz.

Following our recent publication, in this blog, we discuss genome-scale metabolic models phenotype prediction challenges and introduce a hybrid machine-learning model that outperforms traditional methods with less data bioengineeringcommunity.nature.com/posts/making-m…

We are sad to announce that Mozilla Hubs will be shutting down on May 31, 2024. The following blog post contains important information about this development for our community and customers: hubs.mozilla.com/labs/sunset/