🔥The 9th Round of Easy Loan, Earn $40 Reward is in progress❗️ ⏰ Promotion Period: January 15th - Feburary 15th, 2025 👉 Register now and check more details at gate.io/campaigns/358

I'm in a Faculty of Medicine and a substantial number of people in this faculty don't understand why evolutionary biology is relevant to medicine. Papers like this are useful to make the case: science.org/doi/10.1126/sc…

It was great to discuss our paper with the amazing Zakiya Whatley for the Science Magazine podcast. Tune in from 17:50 science.org/content/podcas… to hear about how LinkedIn Premium played a role in our discovery.

“It is remarkable to see the speed with which these bacteria evolve and become epidemic and how they can specialize for a particular lung environment,” Aaron Weimann 🇺🇦 says of Pseudomonas aeruginosa. independent.co.uk/news/science/s…

We are excited to present our fantastic speaker lineup for the #SummerSchool for #AI in #Medicine! Join us and our world-leading experts from 9 to 13 September to start your AI journey as clinician or clinical student! Booking closes soon! Secure a spot: vanderschaar-lab.com/cambridge-ai-i…

My PhD baby is finally in paper format (feat an annoying formatting glitch in Table 2). This has been a true labour of love. A story that started in 2019 and is no where near finished. Dr Lizzy Darby Jessica Blair E. coli has a 7th RND pump. biorxiv.org/content/10.110…

Josie Bryant (Josie Bryant) and I have a 3yr joint postdoc project at Sanger & EBI (ESPOD) Topic: Developing new bioinformatic and modelling approaches for exciting new longitudinal microbiome datasets Project details: embl.org/editorhub/wp-c… To apply: ebi.ac.uk/research/postd…

Metagenomics postdoc fellowship available. We are looking for a talented individual who is willing to take on challenging datasets and develop new analytical approaches

Great pleasure to work with Wei Shen 沈 伟 on a new indexing and alignment scheme, called LexicMap: biorxiv.org/content/10.110… We have been working on uniformly reassembling, QC-ing and annotating all bacterial (+ now archaeal) data, & wanted to be able to do full alignment to it....

Interested in MGEs? Check out our new short commentary paper 🧬 ⌚ about plasmid-dependent phages (PDPs): their history, the new wave of PDPs research, and their potential applications. Out in Nature Reviews Microbiology👇

Now published in bioinformatics, CELEBRIMBOR 'pangenomes from metagenomes' academic.oup.com/bioinformatics… I think reviewer comments helped make it better, so worth another look (at fig 1 particularly!)

Now this is truly high throughput 🤯 “By tracking 140 million bacteria and generating over 20,000 in vitro time-kill curves, we can predict Mtb treatment outcomes in mice and human and link strain-specific survival (drug tolerance) in Mabs to clinical responses.” Congrats!!

🚨New paper alert🚨 So happy to finally share this! now out Cell Reports ✨ We explored the hierarchical structure that controls virulence in Pseudomonas🦠, finding a mutational hotspot that acts as a genetic switch for hypervirulence💀 and AMR💊 cell.com/cell-reports/f…

Incredibly excited to share that our manuscript was just published in @nature ! What a way to start the new year! 🎉 We present phylowave, a framework that enables to learn the fitness dynamics of pathogens from phylogenies. 🧵 A thread... 1/n #IDSky #IDModelling

Tune into a Pseudomonas genomics webinar tomorrow at 11 UTC organised by ESGEM.SG to hear me present our paper on the evolution of Pseudomonas aeruginosa science.org/doi/10.1126/sc… and talks from Adesola Olalekan and Sara Cortes Lara. Register here: us06web.zoom.us/webinar/regist…

If you have experience in sc/spatial transcriptomics with an interest in microbes....come and join our team as a computational postdoc: sanger.wd103.myworkdayjobs.com/WellcomeSang... Incredibly exciting datasets on host-microbe interactions in the lung. Pls RT and reach out if you are interested

Exciting PhD studentship opportunity on understanding chemical permeability to advance antibiotic drug discovery Floto Group jobs.cam.ac.uk/job/50800/. Combines experimental approaches with in silico screening and generative AI.