Our lab has joined twitter! We'll post recent work, talks, and opportunities.

How do communities self-organize around nutrient cycles? By adhering to metabolic not taxonomic constraints - work by Luis Miguel de Jesus Astacio, Kaumudi Prabhakara, Zeqian Li doi.org/10.1073/pnas.2…

Congrats to Karna Gowda (karnagowda.github.io) on a remarkable new paper predicting microbial community metabolism from gene content alone -- out now in Cell. A long running and important collaboration with @Madhav_science doi.org/10.1016/j.cell…

Mine on Wednesday morning!

Chandana's paper is out! So happy to be a part of this. 100,000 is not a number you see often in these datasets.

Kyle's paper is out! Kyle Crocker and Karna Gowda connect global patterns in the soil to lab experiments. I made a contribution: using a comparative study of gene co-evolution in a large genome collection, I showed the same pattern in a third context: the full tree of life.

So excited to see this work out! We delved into the challenge of predicting complex traits from genomes. Inspired by Karna Gowda's success in denitrification, we approached the problem statistically. We found success early on, but the story went way deeper than we thought. A 🧵:

I’m thrilled to announce my next journey after graduate school: Senior Bioinformatics Scientist at BillionToOne ! I look forward to working with the amazing oncology team to drive innovation in the next generation of cancer diagnosis.

We (Zeqian Li Vaibhhav Sinha) wrote a news & views on a beautiful new piece of work from Matti Gralka Otto X. Cordero. The paper uses a large-scale dataset and a statistical approach to uncover a constraint governing carbon catabolism in marine bacteria

Zeqian Li Paper has been published here: journals.plos.org/ploscompbiol/a…

This paper is out now in Nature Microbiology . Fulltext: rdcu.be/dM45B Incredible work by Kyle Crocker Karna Gowda with help from Madhav Mani, Kiseok (Keith) Lee Mikhail Tikhonov Milena C.-W. Zeqian Li x.com/SeppeKuehnLab/…

This paper is out at Cell Systems! x.com/SeppeKuehnLab/… Chandana is now a postdoc with Otto X. Cordero doing more great things! Free link: authors.elsevier.com/c/1jixB8YyDfql…