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1/ How I started my bioinformatics journey. A thread: Back in my PhD, I was studying gene regulation in the context of cancer. My first paper was on CTCF functioning as an enhancer blocker at the VEGFA locus. divingintogeneticsandgenomics.rbind.io/publication/20… yeah, CTCF and VEGFA are my two favorites!

We are posting materials for this year's Introduction to Data Science course here: github.com/datasciencelab… Includes slides, exercises, and labs. Textbook: github.com/rafalab/dsbook To convert the Rmd book chapters to Rmd slides, I use this R function: github.com/rafalab/dsbook…

A new preprint led by @R_Phillips_3 and team in the lab is now live! A brief thread... biorxiv.org/content/10.110…

Interested in single cell genomics but need help getting started? Check out my lab's Single Cell Genomics Day on April 7. Talks will feature recent exciting computational and experimental advances and will be livestreamed at satijalab.org/scgd. Please RT/spread the word!

Interested in single cell genomics but need help getting started? Check out the full agenda for our Single Cell Genomics Day next Friday (4/7). All talks will be live-streamed (no registration required) at satijalab.org/scgd23

We are excited to release Seurat v5- with new methods for multimodal, spatially resolved, and massively scalable single-cell analysis. satijalab.org/seurat

The UAB Heersink SOM has just relaunched its highly successful strategic neurosciences recruiting initiative! We are looking to recruit up to 20 faculty (at any rank) across UAB neuroscience departments. See posting linked here for details! uab.peopleadmin.com/postings/18636

Thanks 10x Genomics for the invite to discuss data analysis resources for 10X datasets. Slides can be seen here if helpful to anyone docs.google.com/presentation/d…

We need to focus on Reproducible Biological Data Science. This is what we strive for U-BDS (UAB Biological Data Science core). Reproducibility trial: 246 biologists get different results from same data sets nature.com/articles/d4158…

Did 10x Genomics just make newer versions of Cell Ranger open source? github.com/10XGenomics/ce… (cc Shaun Jackman, Luiz Irber (@[email protected])). This is a huge win for open, transparent, and reproducible science if it’s the case!

Had a great time presenting on our nf-core pipeline, scnanoseq at #rsgdream2023 . Join us at the #scnanoseq channel in the nf-core Slack group for additional discussions. ~ Austyn and Lara

Great turnout for our R, Unix and Git Software Carpentry workshop. Thanks to U-BDS and Liz Worthey team members for being certified instructors and our helpers!

Our team is growing and thus we are #hiring. If you are interested in transcriptomics, single-cell/nuclei, and or spatial transcriptomics we encourage you to apply! Also, feel free to send us direct messages or emails with your resume and interest. Apply: uab.taleo.net/careersection/…

Want to hear about the latest updates/new techniques in single cell and spatial genomics? Check out my lab's eighth annual Single Cell Genomics Day on March 29. Keynotes from IdoAmitLab Jason Buenrostro and Xiaowei Zhuang. Please RT/spread the word! satijalab.org/scgd

Want to hear about the latest updates/new techniques in single cell and spatial genomics? Check out the full agenda for our Single Cell Genomics Day on Friday, 3/29. All talks will be live-streamed (no registration required) at satijalab.org/scgd

Our Single Cell Genomics Day - highlighting our favorite new sc/spatial methods - starts Friday at 10AM ET! The most common question we get: is this open to anyone? Yes! Talks are free and live-streamed (no registration required) on Youtube and satijalab.org/scgd

Proud to have our work highlighted by the UAB eReporter. This would not be possible without a great team including, Liz Worthey , Bharat Mishra, PhD, Nilesh Kumar | Ph.D., Luke Potter and Austyn Trull ~Lara