Our new preprint, led by Tim Stuart and Andrew Butler. We project CITE-seq data onto HCA references, classify scATAC-seq profiles based on scRNA-seq clusters, and harmonize sequencing and imaging data to predict spatial patterns transcriptome-wide: biorxiv.org/content/early/…

Starting off the Single Cell Computational Biology session of the #KSSingleCell conference with a talk by Fabian Theis, "Modeling Differentiation and Stimulation Response in Single-Cell Genomics." The five methods below were presented.

Female authors might have an unrecognized effect on students’ education, based on an analysis made by a computer program that manages and shares research papers. go.nature.com/2s4cgUK

Congratulations to CIFAR Fellow Anna Goldenberg on her recent appointment as the first-ever chair in biomedical informatics and artificial intelligence at The Hospital for Sick Children (SickKids). Read more in the The Globe and Mail  ow.ly/Ha9i50kd7sW (cc Vector Institute University of Toronto)

Our review, led by Tim Stuart, on Integrative Single Cell Analysis is out Nature Reviews Genetics. We cover: * Technologies for multimodal profiling * Analytical methods for data harmonization+joint learning * Integration of spatial and sequencing datasets nature.com/articles/s4157…

Very proud to announce "Garnett", a software system for rapidly annotating cells according to type in single-cell RNA-seq. Written by Hannah Pliner with Jay Shendure. Software: cole-trapnell-lab.github.io/garnett/ and preprint: biorxiv.org/content/10.110…

Here's a little movie zooming in Monocle 3's trajectory for the myocytes, which emerge from the mouse embryo's "mesenchymal trajectory" (see Figure 6)