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Metagenome taxonomy profilers usually ignore unknown species. SingleM is an accurate profiler which doesn't, even detecting phyla with no MAGs. We applied it to 250,000 metagenomes- in environmental samples 75% lack a genome/MAG (abundance-weighted). A 🧵biorxiv.org/content/10.110…

Happy to announce that our paper : TreeViewer version 2.2.0 is out with Dr. Giorgio Bianchini! Ecology and Evolution Free Software plotting age distributions, spreadsheet editor, publication quality phylogenies, and more. #Phylogenetics Publication: shorturl.at/nwKN6

Two post-doctoral #Jobs in #antimicrobialresisatnce now advertised. I'll be at #Microbio24 poster 048 on Wednesday. 1. universityvacancies.com/maynooth-unive… 2. universityvacancies.com/maynooth-unive…

We are delighted to invite you to join us for PathBio Ireland 24 at Ollscoil na Gaillimhe | University of Galway on 6-7th June 2024. This two-day meeting is FREE to attend, bringing together researchers in pathogen biology from Ireland and abroad. eventbrite.com/e/pathbio-irel…

Reminder that this Friday is the deadline for abstract submission to PathBio Ireland 24 at Ollscoil na Gaillimhe | University of Galway on 6-7th June 2024. Offered oral and poster presentations will be chosen from abstracts. eventbrite.com/e/pathbio-irel…

The deadline for abstract submission to PathBio Ireland 24 at Ollscoil na Gaillimhe | University of Galway on 6-7th June 2024 has been extended until the Friday (10th May) ⏲️ Offered oral and poster presentations will be chosen from abstracts🦠 eventbrite.com/e/pathbio-irel…

I am looking for a postdoc with experience in geostatistics, mapping, and machine learning to take on a 2-year position mapping AMR drivers in Ireland, funded by the Irish Department of Agriculture. More details here: nature.com/naturecareers/…

The taxonomic and genomic attributes of oligotrophic soil bacteria academic.oup.com/ismecommun/adv…

First publication from my group titled⁩ How can we escape the ESKAPEs: Antimicrobial resistance mechanisms and what lies ahead? ⁦PLOS Pathogens⁩ #AMR #ESKAPEs ⁦Jessica Kelly⁩ ⁦Ollscoil na Gaillimhe | University of Galway⁩ journals.plos.org/plospathogens/…

I am recruiting for a 4-year #postdoc position and a fully funded #PhD position at Ollscoil na Gaillimhe | University of Galway to study soil nitrogen cycling, GHG emissions and soil microbial ecology. For more information, see nature.com/naturecareers/… and nature.com/naturecareers/…

Our review article about phylogenetic (gene tree-species tree) reconciliation is out. We make the case that reconciliation methods provide a natural framework for modelling/studying microbial evolution, summarise some previous work... academic.oup.com/ismej/advance-…

isolateR is out! 🔎🧬 Excited to share our new R package that simplifies generating #microbial libraries from Sanger #sequencing data! 🦠💻 Say goodbye to manually trimming poor quality regions/N’s & #BLAST limitations with our automated, scalable pipeline academic.oup.com/bioinformatics…

For anyone interested in the #evolution of #virulence and the #gutmicrobiota I've a new preprint perspective on the topic in collaboration with Fernando Baquero and Bruce Levin 👇ecoevorxiv.org/repository/vie… APC Microbiome Ireland Microbiology UCC SEFS@UCC

We are running a massive online open course on AMR databases starting end of the month. Its completely free, study at your own pace and its ~15 hours overall over the 3 weeks (although you can finish any time in a year). Please spread in your networks! …erences.wellcomeconnectingscience.org/event/antimicr…

Join us in Athlone for The Microbiology Annual Meeting in Ireland. One week left to register. Highlights include a discussion on the National AMR action plan and education and EPE session. 🦠🔬

Bacterial population-level trade-offs between drought tolerance and resource acquisition traits impact decomposition academic.oup.com/ismej/advance-…

Happy New Year from the Galway RNA Research Cluster. We are a multi-disciplinary consortium of researchers at the University of Galway, Ireland. Look out for our ‘Meet the Researcher’ posts over the next few weeks to find out more about what we do! #GalwayRNAResearchCluster

Pyruvate kinase directly generates GTP in glycolysis, supporting growth and contributing to guanosine toxicity | mBio journals.asm.org/doi/10.1128/mb…

Looking to appoint a new or experienced Postdoc to join my team. Investigating novel therapeutics targeting Crohn's disease associated bacteria. Background in Microbiology, Immunology, Biochemistry or related field. 🦠🔬 Apply here: my.corehr.com/pls/trrecruit/… Closes 31st May 2025