Stay tuned! 🧬 While the dolphin project is on hold, I’m excited to explore new marine eDNA 🌊 projects. Plenty of updates, discoveries, and learning ahead! 🐠🔬 #Bioinformatics #MarineBiology #Genomics

🌊Project Update: Exploring Fish Biodiversity through Marine eDNA Analysis🐠 My first Project Has came to an end, starting out to look for fish biodiversity in a marine eDNA sample then shifting to bacterial diversity due to it's abundance was exciting🦠🐟 #Bioinformatics #eDNA

🚀 Excited to kick off a new eDNA project! 🌊 This time, I'm diving into Bangor University’s LOFRESH WP2 dataset to explore freshwater biodiversity. 🧬 Announcement will be made soon! Stay Tuned! Bangor University #Bioinformatics #eDNA #Biodiversity #Bacteria #Fish #Plants

🧬New Project: Exploring gene expression changes in Streptococcus pneumoniae D39 in response to oxidative stress (HOCl). 🧬 I'm diving into an RNA-seq project to expand my skills and try new tools. Datasets by EMBL-EBI Bielefeld University #Bioinformatics #rna #rnaseq #Genomics

After quality checks and adapter trimming, alignment using HISAT2 against S. Pneumonia D39 showed an average of 95% mapping rate across the 6 runs chosen for the project! 🏹 I will proceed to sort the BAMs and assign those reads to genes. 🧬 #Bioinformatics #RNAseq #DataPrep

🎉 Project Wrap-Up! 🎉 This marks the completion of my 1st RNAseq bioinformatics training project! Learned a lot from quality control & alignment to identifying DEGs & gaining biological insights I'm ready to learn even more & take it to the next level #RNAseq #Bioinformatics

If you're facing issues accessing rihan-cgi.web.app Then please try out using rihancgi.pages.dev Let me know of any other issues you're facing and happy 3D Modeling :D #RihanCGI

A major milestone: my first RNAseq preprint is now live on bioRxiv🎊 I reanalyzed public data from the human SCG to uncover neuroimmune signatures during cardiac disease This was a great learning experience & I am excited to use everything I learned for new ideas #Bioinformatics

Broke down the key findings, plots, and neuroimmune themes from the SCG reanalysis into a blog post for anyone not up for the full RNAseq reanalysis preprint 🧬 Read it here: djosergenomics.github.io/Human-SCG-RNAs… #bioinformatics #Rnaseq #Transcriptomics

🚀New Blog Post! Just finished a training project on variant calling using zebrafish data from University of Glasgow study on fisheries selection (PRJNA630223) Walked through the full pipeline: QC → alignment → variant calling → VEP annotation #Genomics #Zebrafish #VariantCalling

I'm planning on making a series of mini blog tutorials on bulk RNAseq, they'll be beginner friendly to help someone who's just starting. I'm also planning to theme it around ancient Egypt just like Djoser ;D So stay tuned! #Bioinfomatics #RNAseq

🎊 Scroll 1 of Djoser’s Bulk RNAseq Tutorial Codex: Imhotep's Insights 🎊 We start by collecting real RNA-seq data from ENA using Google Colab. Inspired by Imhotep - ancient Egypt’s architect of the Pyramid of Djoser. 📜 Read: djosergenomics.github.io/Scroll-1-Imhot… #bioinformatics #RNAseq

هذه وصيّتي، ورسالتي الأخيرة. إن وصلَتكم كلماتي هذه، فاعلموا أن إسرائيل قد نجحت في قتلي وإسكات صوتي. بداية السلام عليكم ورحمة الله وبركاته يعلم الله أنني بذلت كل ما أملك من جهدٍ وقوة، لأكون سندًا وصوتًا لأبناء شعبي، مذ فتحت عيني على الحياة في أزقّة وحارات مخيّم جباليا للاجئين،

Happy 1st Birthday to Djoser Genomics!🥳 From starting Djoser Genomics, Learning & Exploring Various Projects, to publishing my first preprint & creating the Bulk RNAseq Tutorial Codex Thank you for being part of this journey so far. Here’s to Year 2🚀 djosergenomics.github.io/Djoser-Genomic…

HTGAA Week 3 is lab automation! 🤖 I wrote a script to program a virtual Opentrons robot to draw my Djoser Genomics pyramid simulateing robots pipetting 100+ dots of fluorescent E.coli as manually it is slow & error-prone. #HTGAA #synbio #Opentrons #automation #bioinformatics

Done Week 4 of HTGAA (Protein Design) is & WOW! I was always intimidated by 3D protein models in papers & never thought I'd understand them one day! I loaded a PDB file into PyMOL, saw alpha helices & beta sheets of my Tyrosinase enzyme. This is so cool🚀 #HTGAA #proteindesign

Tried out Google's Google Antigravity today! For a while wanted to introduce a dark mode for the Djoser Genomics Website so decided to let Antigravity's AI Agent take on the task and it performed very well done. Saved me a lot of time indeed! djosergenomics.github.io

الْحَمْدُ للهِ حَمْدًا كَثِيرًا طَيِّبًا مُبَارَكًا فِيهِ

Introducing Project Menhed 🎨 Ancient Egyptian scribes used a palette (Menhed) to mix ink. I'm using Python to mix genes. Phase 1: Design a bacteria that produces a Red Dye with high efficiency & 100% In Silico. I'll share Updates Publicly Read More 👇 djosergenomics.github.io/Introducing-Pr…

I haven't posted in a while, and i was in grind against OptKnock so i couldn't do it but i am back! and i have the progress updated!✨ it was mostly about learning, and intro to Metabolic Engineering, and using COBRApy. (and alot of code debugging XD). 👉djosergenomics.github.io/Project-Menhed…