🔍 Scroll 2 of Djoser’s Bulk RNAseq Tutorial Codex is here! We dive into RNA-seq Quality Control with FASTQC — guided by Hesy-Ra, the first known dentist & physician in history. 🧪 Read here: djosergenomics.github.io/Scroll-2-Hesy-… #bioinformatics #RNAseq #scicomm

🧬 Scroll 3 of the Bulk RNA-seq Tutorial Codex is here! ⚒️ Guided by King Khufu, we pseudoalign our reads using Kallisto — fast, efficient, and accurate. 🌐 Full tutorial + cultural spotlight: 📜 djosergenomics.github.io/Scroll-3-Khufu… #RNAseq #bioinformatics #scicomm

📜 Scroll IV: Khafre’s Connections is here! Step into the next stage of our RNAseq journey! Importing Kallisto results into R, linking them to gene annotations, & building a strong foundation for downstream analysis Here: djosergenomics.github.io/Scroll-4-Khafr… #bioinformatics #RNAseq #scicomm

📜 Scroll V: Menkaure's Measures! We dive into Differential expression analysis (DEA), using DESeq2, and how to interpret the findings Check it out: djosergenomics.github.io/Scroll-5-Menka… #bioinformatics #RNAseq #scicomm

📜 Scroll VI: Ramses' Plots! We dive into Visualizations! MA, PCA, Volcano Plots and Heatmaps! Check it out: djosergenomics.github.io/Scroll-6-Ramse… #bioinformatics #RNAseq #scicomm

📜 Scroll VII: Thutmose's Trends! Here, We identify Trends among our DEGs using Functional (GO) and Pathway (KEGG) Enrichment Analysis! Check it out: djosergenomics.github.io/Scroll-7-Thutm… #bioinformatics #RNAseq #scicomm

📜 Scroll VIII: Djoser's Discoveries! The Grand Finale, we dive into Gene set Enrichment Analysis (GSEA), why we do it, how we do it and how to visualize and interpret it. Check it out: djosergenomics.github.io/Scroll-8-Djose… #bioinformatics #RNAseq #scicomm

🎉The Bulk RNAseq Tutorial Codex is now complete! 🎉 From dataset discovery to enrichment analyses Every scroll📜 is now available, covering alignment, quantification, DEGs, visualization & everything in between The Codex is yours to explore✨ #RNAseq #Bioinformatics #scicomm

Happy 1st Birthday to Djoser Genomics!🥳 From starting Djoser Genomics, Learning & Exploring Various Projects, to publishing my first preprint & creating the Bulk RNAseq Tutorial Codex Thank you for being part of this journey so far. Here’s to Year 2🚀 djosergenomics.github.io/Djoser-Genomic…

Been busy with final exams in med school for the last couple of weeks, still not done! But I'll have some time to get back here :) I've got some new projects and ideas that I'm excited about, so stay tuned! :D

I decided to take a deep dive into Synthetic Biology, Bio & Genetic Engineering, something I've wanted to learn for a while. I believe it holds incredible potential & innovation for the future if used correctly Got any tips or resources? :D #SyntheticBiology #Bioengineering

I'll audit the How to Grow Almost Anything (HTGAA) course for my first intro to my Synthetic Biology journey. I just did the Bio Bootcamp, & i really loved the interactive sessions on Benchling and Opentrons. Super Excited for more! #SyntheticBiology #Bioengineering #MIT #HTGAA

HTGAA Week 3 is lab automation! 🤖 I wrote a script to program a virtual Opentrons robot to draw my Djoser Genomics pyramid simulateing robots pipetting 100+ dots of fluorescent E.coli as manually it is slow & error-prone. #HTGAA #synbio #Opentrons #automation #bioinformatics

Done Week 4 of HTGAA (Protein Design) is & WOW! I was always intimidated by 3D protein models in papers & never thought I'd understand them one day! I loaded a PDB file into PyMOL, saw alpha helices & beta sheets of my Tyrosinase enzyme. This is so cool🚀 #HTGAA #proteindesign

Part of HTGAA Week 4 is to write a proposal on an In-silico Bacteriophage Engineering. My proposal: ArmoredPhage🛡️ My goal: Engineer a Thermostable MS2 Bacteriophage Using Protein Design Techniques. Check it out djosergenomics.github.io/Armored-Phage-… #HTGAA #synbio #AlphaFold #proteindesign

Tried out Google's Google Antigravity today! For a while wanted to introduce a dark mode for the Djoser Genomics Website so decided to let Antigravity's AI Agent take on the task and it performed very well done. Saved me a lot of time indeed! djosergenomics.github.io

Introducing Project Menhed 🎨 Ancient Egyptian scribes used a palette (Menhed) to mix ink. I'm using Python to mix genes. Phase 1: Design a bacteria that produces a Red Dye with high efficiency & 100% In Silico. I'll share Updates Publicly Read More 👇 djosergenomics.github.io/Introducing-Pr…

I haven't posted in a while, and i was in grind against OptKnock so i couldn't do it but i am back! and i have the progress updated!✨ it was mostly about learning, and intro to Metabolic Engineering, and using COBRApy. (and alot of code debugging XD). 👉djosergenomics.github.io/Project-Menhed…