[URGENT] L'équipe ECOMAP de la Station Biologique de Roscoff recherche un(e) candidat(e) pour une thèse en Ecologie Microbienne Marine qui combine bioanalyse/biostatistique et analyses expérimentales au labo. lnkd.in/gJ9Q9f3D contact : [email protected] Laurence Garczarek

🔬 Romain Koszul dirige le projet COMET sur les génomes microbiens, financé par Ministère Enseignement supérieur et Recherche et soutenu par ANR - Agence nationale de la recherche, Secrétariat général pour l’investissement. 🎯Objectif : explorer les génomes de bactéries et d'archées pour mieux comprendre leur évolution. #France2030

Editorial now out on building microbial literacy through a child-centric curriculum. It's been an honour to contribute to this initiative under Ken Timmis' visionary lead. Microbes can change the world for the better, but not enough people know about them. …icro-journals.onlinelibrary.wiley.com/doi/10.1111/17…

You have an interest for microbial physiology and molecular ecology ? Check the adv for our junior postdoc position and we are looking forward to read your application to work on truncated denitrifiers and the production of N2O in marine sediments. workingat.nioz.nl/o/postdoc-posi…

Don't miss the 9th EBAME Workshop on Computational Microbial Ecogenomics 📌Brest, France 🗓️12-26 October 2024 ⏳Apply by 01 July 2024, to advance your skills in genome-resolved metagenomics and more! 🌊🧬 🔗maignienlab.gitlab.io/ebame @IUEM_Brest #EBAME #EBAME9 #DataAnalysis

Wow, @nature has retracted the 2020 Poore et al. cancer microbiome paper that we showed (journals.asm.org/doi/10.1128/mb…) was deeply flawed. The retraction date is tomorrow so I can't yet read the official notice, but I'll update when I can Retraction Watch Professor Booty PhD

If you've asked me about bacterial phylogenetics, you've heard me complain about the current standard... concatenation. We've been working on approaches to do better, and now have a first preprint on the topic! arxiv.org/abs/2407.00227 Joint work w María Valdez 🤩 1/ 🧵

Fini les vacances! Back to Brest!

Preprint on "BWT construction and search at the terabase scale". We can compress 100 human genomes to 11GB in 21 hours, find SMEMs with it, do affine-gap alignment and retrieve similar local haplotypes. 7.3Tb commonly sequenced bacterial genomes ⇒ 30GB arxiv.org/abs/2409.00613

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Chemolithoautotrophic bacteria flourish at dark water-ice interfaces of an emerged Arctic cold seep academic.oup.com/ismej/advance-…

The Quince Group at the Earlham Institute and Quadram Institute are supporting the #EBAME Workshop on Computational #Microbial #Ecogenomics in France next week. The annual course looks at the latest applications of sequencing and computational approaches for microbial ecology.

Ever wondered if those butane-oxidizing archaea (lnkd.in/d5Gu3rFH) could run their metabolism in reverse? Carbon dioxide to butane? Well, wonder no more: check out our new paper, now live at Nature Communications nature.com/articles/s4146…

Contribution of ammonia oxidizers to inorganic carbon fixation in the dark ocean biorxiv.org/cgi/content/sh… #biorxiv_micrbio

Foldseek pubmed.ncbi.nlm.nih.gov/37156916/ Clustering the AlphaFold DB pubmed.ncbi.nlm.nih.gov/37704730/ Structure is up to 10X more conserved than seqs pubmed.ncbi.nlm.nih.gov/19507241/ Foldseek pipe biorxiv.org/content/10.110… Twilight zone link.springer.com/protocol/10.10… VQ-VAE (IA) github.com/althonos/mini3…