The connection between GenePattern and Globus has been restored. All systems are operating properly once again.

GenePattern, Galaxy Project, and Cytoscape in IJMS MDPI! Transcriptomic Analysis of Glycosylation and Neuroregulatory Pathways in Rodent Models in Response to Psychedelic Molecules. Oommen et al. 2023. IJMS. doi.org/10.3390/ijms24… #nciitcr #bioinformatics

On Monday, March 16th from 1:00 pm to 2:00 pm PST (UTC-8) the public GenePattern server at cloud.genepattern.org/gp will be unavailable for scheduled maintenance.

Today's maintenance is complete and the GenePattern server at cloud.genepattern.org is once again available for use

Genomics to Notebook (g2nb): extending the electronic notebook to address the challenges of bioinformatics analysis biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

GenePattern is glad to join Galaxy Project, Cytoscape, and IGV Team as tools in the JupyterLab-based g2nb environment. g2nb.org #nciitcr #bioinformatics

Harmony, from the Roychoudhuri Lab, is now available on GenePattern! Harmony corrects batch effects in single-cell RNA seq datasets. Use it at rb.gy/o6a5n #nciitcr #Bioinformatics

The GenePattern server at cloud.genepattern.org will be unavailable between 2-3pm PST (UTC+8) on Monday August 7th, 2023 as it is upgraded to the latest version.

The GenePattern server at cloud.genepattern.org will be unavailable between 1-3pm PST (UTC+8) on Monday August 28th, 2023 as it is upgraded to the latest version.

g2nb: Genomics to Notebook extends GenePattern Notebooks to add Galaxy Project, IGV Team, Cytoscape to Project Jupyter for easy access to 1000s of bioinformatics tools as notebook cells g2nb.org drive.google.com/file/d/1mIPo06… g2nb #bioinformatics #openscience #nciitcr

g2nb: Genomics to Notebook! A new platform that combines the accessibility and research narrative capabilities of Project Jupyter with the genomics tools available in Galaxy Project, IGV Team, Cytoscape, and GenePattern. youtu.be/40YEVyJnGAc #nciitcr #bioinformatics

The GenePattern server, cloud.genepattern.org, will be offline for maintenance on Tuesday November 7th, 2023 from 1-3pm PST (GMT-7).

GenePattern and GSEA-MSigDB in Nature Communications! The tumor microenvironment shows a hierarchy of cell-cell interactions dominated by fibroblasts. 2023. Nature Communications. doi.org/10.1038/s41467… #nciitcr #bioinformatics

GenePattern and GSEA-MSigDB in Nature Communications! Tumour-retained activated CCR7+ dendritic cells are heterogeneous and regulate local anti-tumour cytolytic activity. 2024. Nature Communications. doi.org/10.1038/s41467… #nciitcr #bioinformatics

GenePattern in Nature Communications! A transcriptome based molecular classification scheme for cholangiocarcinoma and subtype-derived prognostic biomarker. 2024. Nature Communications. doi.org/10.1038/s41467… #nciitcr #bioinformatics

GenePattern needs your help! We are preparing a grant proposal for the sustainment of GenePattern server & GenePattern Notebooks. An email from you will help underscore their impact when the grant is reviewed. See our post at: bit.ly/gp-needs-your-…

On Monday September 16, the main GenePattern public server, cloud.genepattern.org/gp, will be unavailable from 7:00 AM through 3:00 PM PST (UTC +8) to update the GenePattern software and database.

Today's ( Monday September 16, 2024) GenePattern upgrade to the cloud server, cloud.genepattern.org/gp, is complete. Please let us know on the help forum, groups.google.com/u/1/g/genepatt…, if you experience any issues.

Tangram is now available on GenePattern! 🎉 Map sc-RNA-seq data onto spatial gene expression data. GPU & CPU compatible for flexible workflows. 👉 CPU: t.ly/9G2lJ 👉GPU: t.ly/XO8qA 📷 GitHub: t.ly/07w-M #nciitcr Broad Institute NIH

The Genomics to Notebook (g2nb) environment is featured on the @GalaxyProject blog. Read about how to use Galaxy, IGV, and other bioinformatics tools from within a Project Jupyter notebook interface! galaxyproject.org/news/2025-04-1… #nciitcr #bioinformatics