New preprint arXiv.org with our collaborators at SAFARI Research Group: Meryem Banu Cavlak, Gagandeep Singh, Mohammed Alser, Can Firtina, Onur Mutlu et al. "TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling Filtering" arxiv.org/abs/2212.04953

Our preprint, "A Framework for Designing Efficient Deep Learning-Based Genomic Basecallers" is online! We introduce the RUBICON framework & RUBICALL, the first hardware-optimized basecaller. Preprint: arxiv.org/pdf/2211.03079… Gagandeep Singh w/ Mohammed Alser Can Firtina Onur Mutlu arXiv.org

Thanks to all the co-authors Jisung Park Mohammed Alser Damla Şenol Çalı Taha Michael Shahroodi Nika Mansourighiasi Gagandeep Singh Kanellopoulos Konstantinos Can Alkan Onur Mutlu! And special thanks to Kristoffer Sahlin for providing very useful and insightful comments that helped improve our paper substantially!

📢 We have released the program for the #BIOArch Workshop! safari.ethz.ch/recomb23-arch-… Do not miss this exciting lineup of experts from various fields discussing the latest advancements in genomics & computer architecture! Onur Mutlu SAFARI Research Group RECOMB Conference Series #RECOMB2023

We had some great talks this morning in our #BIOArch workshop w/ Onur Mutlu Gagandeep Singh Leonid Yavits Mohammed Alser Izzat El Hajj & Nika Mansourighiasi. Join us live, back after lunch at 13:45! Program: safari.ethz.ch/recomb23-arch-… Livestream: youtube.com/watch?v=2rCsb4… Can Firtina RECOMB Conference Series

Happy to share that our work “SPARTA: Spatial Acceleration for Efficient and Scalable Horizontal Diffusion Weather Stencil Computation” has been accepted in Association for Computing Machinery SIGARCH ICS’23! Thanks to the co-authors! #supercomputing #HPC Onur Mutlu Juan Gómez Luna SAFARI Research Group AMD

We're happy to share our work “SPARTA: Spatial Acceleration for Efficient and Scalable Horizontal Diffusion Weather Stencil Computation” has been accepted at #ICS2023 SIGARCH! Gagandeep Singh Onur Mutlu Juan Gómez Luna AMD Preprint: arxiv.org/pdf/2303.03509… Code: github.com/CMU-SAFARI/SPA…

Join us this afternoon for Poster Session I RECOMB Conference Series! We'll also have several posters at Poster Session II tomorrow: AirLift, GenStore, RUBICON & TargetCall. We look forward to discussing our work! Can Firtina Jeremie Kim Nika Mansourighiasi Gagandeep Singh Banu Cavlak Onur Mutlu

Join us tomorrow RECOMB Conference Series for a talk on BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis: academic.oup.com/nargab/article… Can Fırtına w/ Jisung Park Mohammed Alser Damla Şenol Çalı Nika Mansourighiasi Gagandeep Singh Kanellopoulos Konstantinos Can Alkan Onur Mutlu

Join us for the premiere of our work "Evaluating Machine Learning Workloads on Memory-Centric Computing Systems", presented at #ISPASS23.   Premiere Monday May 8 3PM CEST: youtube.com/watch?v=60pkaI… Paper: arxiv.org/pdf/2207.07886… Juan Gómez Luna w/ Gagandeep Singh Onur Mutlu UPMEM

Join us this Friday at 3:40 PM EDT in Session 8 at #ICS2023, Florida! I will present “SPARTA: Spatial Acceleration for Efficient and Scalable Horizontal Diffusion Weather Stencil Computation." Paper: arxiv.org/pdf/2303.03509… Onur Mutlu Juan Gómez Luna AMD SAFARI Research Group ETH Zürich

Join us Tuesday for more talks presented at the AACBB workshop #ISCA2023! [6] RUBICON: A Framework for Designing Efficient Deep Learning-Based Genomic Basecallers, presenter: Gagandeep Singh Premiere Tue July 18 4.15PM CEST: youtube.com/watch?v=JEEdPJ… BioPIM Project AMD ETH Zurich

RUBICON Paper: arxiv.org/pdf/2211.03079… Authors: Gagandeep Singh Mohammed Alser Alireza Khodamoradi, Kristof Denolf, Can Firtina Meryem Banu Cavlak Henk Corporaal, Onur Mutlu Slides (pdf): safari.ethz.ch/safari_public_… Slides (pptx): safari.ethz.ch/safari_public_…

RawHash authors: Can Firtina Nika Mansourighiasi Joel Lindegger Gagandeep Singh M. Meryem Banu Cavlak Haiyu Mao Onur Mutlu Paper: academic.oup.com/bioinformatics… Source code & datasets: github.com/CMU-SAFARI/Raw… Slides (pdf): people.inf.ethz.ch/omutlu/pub/Raw… Slides (pptx): people.inf.ethz.ch/omutlu/pub/Raw… BioPIM Project

Very excited to share that our work RUBICON has been published in the top-tier Genome Biology journal! AMD ETH Zurich SAFARI Research Group @TUeindhoven Paper: lnkd.in/dpPZzYS3 GitHub: lnkd.in/dBCqekJV Onur Mutlu Can Firtina Mohammed Alser Meryem Banu Cavlak #genomics #ai

.Can Firtina is giving a talk tonight in the AMD "HPC Applications, SW & HW Sync" seminar on "Enabling Fast, Accurate, & Efficient Real-Time Genomic Sequence Analysis via New Algorithms & Architectures", 9PM CEST. Thanks to our hosts Gagandeep Singh & Nicholas Malaya Onur Mutlu

Excited to return to ETH Zürich, where I spent 4 incredible years of my life, to give a talk now as a Researcher at AMD. Looking forward to discussing our latest work at AMD RAD and reconnecting with the incredible ETH community. Join us! #ETH #AMD #RAD #Research #Innovation #AI

From data-heavy genome analysis to accelerated AI models, compute power matters. AMD’s next-gen hardware is powering #RECOMB2025 breakthroughs. Don’t miss the innovations shaping life sciences—join us April 26-29 in Seoul! 🧬💻 #AMD #AI #LifeSciences

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AMD, The University of New South Wales Sydney, and the Pawsey Supercomputing Research Centre have developed Slorado, the first fully open-source tool for real-time nanopore DNA decoding. Built on AMD GPUs and ROCm, researchers are now reducing full human genome basecalling to