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#ProbGen24 Best talk I liked. Solving association test and prediction via approximate message passing. Accurate and lightening fast. May be even faster. biorxiv.org/content/10.110…

Another feature of PCAone, PCA based LD pruning and clumping method for structured population from our group, led by Ulises and Malthe. biorxiv.org/content/10.110…

The tweetutorial will come after vocation. Especially about impute both mother and fetus genome simultaneously from NIPT cfDNA!

“If the oceans die, we all die.” Please sign the petition addressing the Danish Prime Minister, Mette Frederiksen, to release him from custody. paulwatsonfoundation.org/freepaulwatson/ You can also call and email: +45-72268400 [email protected] #FREEPAULWATSON Statsministeriet

#WORLDRECORD FOR PAN ZHANLE! 🇨🇳 Chinese Olympic Committee | World Aquatics | #Swimming #Paris2024 | #OMEGA | #OMEGAOfficialTimekeeper

#Gold shines on Zheng Qinwen! 🇨🇳 Congratulations to the People's Republic of China for securing first place in tennis women's singles 🎾 @OlympicCN | ITF_Tennis | #Tennis | #Paris2024 | #Samsung | #TogetherforTomorrow

On behalf of Zilong Li , Anders Albrechtsen and myself, I’m pleased to announce the release of QUILT2, a method for lc-WGS imputation using biobank scale reference panels that works on diverse sequencing input data including NIPT data. biorxiv.org/content/10.110…

We're towards getting the fetus genome before child birth through sequencing one drop of blood of pregnant woman.

Haven't read closely. But, the imputation accuracy won't be negative correlated with fetal fraction if using QUILT2. Really excited about how QUILT2 can be applied in real data.

New blog post Gencove! Imputation from off-target exome sequencing reads was one of the original use-cases proposed for low-pass sequencing; we've built pipelines to make this routine gencove.com/blog/genome-wi…

Glad to know there are stats gen people outside building #rstats package upon vcfppR and vcfpp.h. github.com/Zilong-Li/vcfp…

A collection of NIPT study out on cell genomics

DeepSeek (Chinese AI co) making it look easy today with an open weights release of a frontier-grade LLM trained on a joke of a budget (2048 GPUs for 2 months, $6M). For reference, this level of capability is supposed to require clusters of closer to 16K GPUs, the ones being

I am excited that our *hapla* framework for fast and scalable haplotype clustering in phased genotype data has been published in Nature Communications! Simon Rasmussen Michael E. Benros GitHub: github.com/Rosemeis/hapla Paper: nature.com/articles/s4146…

Nature research paper: Genetic architecture in Greenland is shaped by demography, structure and selection go.nature.com/4hvprFa

The Greenlandic population offers significant potential for precision medicine. The largest analysis of its kind is now in nature. A big thank you to all participants in the health surveys throughout the last 25 years 🙏 nature.com/articles/s4158… 🧵1/6

Jiří Moravec Bruno Rodrigues RSamtools is very slow, and usually people only bind small sections of htslib for specific usage. bioc's RHTSLIB provide very old headers .... Zilong Li's vcfppR package github.com/Zilong-Li/vcfp… is very good and super fast, maybe he will provide faidx classes in vcfpp.h

Nature research paper: Human de novo mutation rates from a four-generation pedigree reference go.nature.com/3ECWGs2

We sequenced and analyzed the world's rarest large mammal, the #saola. That turned into a cool paper substantially increasing what we know about this elusive animal, its evolutionary history, population structure, and long-term decline. Check it out here: cell.com/cell/fulltext/…