🔥 Benchmark Alert! MotifBench sets a new standard for evaluating protein design methods for motif scaffolding. Why does this matter? Reproducibility & consistent evaluation have been lacking—until now. Paper: arxiv.org/abs/2502.12479 | Repo: github.com/blt2114/MotifB… A thread ⬇️

In 1965, Margaret Dayhoff published the Atlas of Protein Sequence and Structure, which collated the 65 proteins whose amino acid sequences were then known. Inspired by that Atlas, today we are releasing the Dayhoff Atlas of protein sequence data and protein language models.

AtomWorks is out! Building upon Biotite, we built for a toolkit for all things biomolecules and trained RF3 with it. All open-source, test it via `pip install atomworks`! AtomWorks: github.com/RosettaCommons… RF3: github.com/RosettaCommons… Paper: tinyurl.com/y2w4z65b 1/6