Yuji Sakai (境祐二) (@yj_sakai) 's Twitter Profile
Yuji Sakai (境祐二)

@yj_sakai

I work on theoretical studies of intracellular organization.
chromosome formation, membrane morphogenesis, atomic and/or coarse-grained simulations

ID: 1448923692784775176

calendar_today15-10-2021 08:08:37

57 Tweet

75 Followers

158 Following

Max Planck Institute of Biophysics (@mpibp) 's Twitter Profile Photo

Autophagy ♻️ can't happen without PI3KC3-C1, a protein complex that initiates the cell’s cleanup by phosphorylating lipids 🧪 Congrats to the Michael Lazarou, Hummer Lab & Hurley Lab on their new publication!

Austin E. Y. T. Lefebvre (@austin_lefebvre) 's Twitter Profile Photo

Do you LOVE organelles?? Well I am THRILLED to announce that Nellie has been published in Nature Methods! Nellie a fully automated pipeline for organelle segmentation, tracking, and hierarchical feature extraction in 2D, 3D, timelapse, multichannel live-cell microscopy 🧵1/N

Biology+AI Daily (@biologyaidaily) 's Twitter Profile Photo

Machine Learning Methods to Study Sequence–Ensemble–Function Relationships in Disordered Proteins 1/ This review explores how machine learning (ML) is revolutionizing the study of intrinsically disordered proteins (IDPs), which lack stable 3D structures and instead exist as

Machine Learning Methods to Study Sequence–Ensemble–Function Relationships in Disordered Proteins  

1/ This review explores how machine learning (ML) is revolutionizing the study of intrinsically disordered proteins (IDPs), which lack stable 3D structures and instead exist as
YC Lin 🧪👩🏻‍💻 (@yiechanglin) 's Twitter Profile Photo

1/ In my final project as part of the Corry Lab, we show the bacterial TAM complex facilitates the spontaneous flow of phospholipids from the IM to the OM in MD simulations.. biorxiv.org/content/10.110…

Science Magazine (@sciencemagazine) 's Twitter Profile Photo

In a new Science study, cryo–electron tomography captures the in-cell architecture of the mitochondrial respiratory chain, illuminating how the coordinated action of molecular machines drives life’s fundamental energy conversion. Learn more: scim.ag/4iT8mpD

In a new Science study, cryo–electron tomography captures the in-cell architecture of the mitochondrial respiratory chain, illuminating how the coordinated action of molecular machines drives life’s fundamental energy conversion.

Learn more: scim.ag/4iT8mpD
Sergio Cruz-León (@sergiocruzleon1) 's Twitter Profile Photo

Excited to share our pre-print on the molecular architecture of heterochromatin in human cells🧬🔬 w/ Jan Philipp Kreysing, Johannes Betz,Turoňová lab, Marina Lusic, Hummer lab, Beck Laboratory, Max Planck Institute of Biophysics 🔗 Preprint here: doi.org/10.1101/2025.0…

Weria Pezeshkian (@wpezeshkian) 's Twitter Profile Photo

New preprint: TS2CG v2, building and simulating membranes with any shape and lateral organisation. We got Martini Globe, Martini Möbius strip and again mitochondrion. biorxiv.org/content/10.110… Siewert-Jan Marrink Source code: github.com/weria-pezeshki…

New preprint: TS2CG v2, building and simulating membranes with any shape and lateral organisation. We got Martini Globe, Martini Möbius strip and again mitochondrion.  biorxiv.org/content/10.110…
<a href="/CG_Martini/">Siewert-Jan Marrink</a> 
Source code: github.com/weria-pezeshki…
nature (@nature) 's Twitter Profile Photo

Nature research paper: Structural basis of lipid transfer by a bridge-like lipid-transfer protein go.nature.com/4itODM4

John F Marko (@johnfmarko) 's Twitter Profile Photo

Subchromosomal mechanics of pericentric and centromeric chromatin along stretched mitotic chromosomes - surprise is little effect of CENP-N and -C degradation on CENP-A organization pubmed.ncbi.nlm.nih.gov/39937678/ From Ron Biggs and StraightLab #centromere #kinetochore #chromosome

Subchromosomal mechanics of pericentric and centromeric chromatin along stretched mitotic chromosomes - surprise is little effect of CENP-N and -C degradation on CENP-A organization
pubmed.ncbi.nlm.nih.gov/39937678/
From Ron Biggs and <a href="/StraightLab/">StraightLab</a> 
#centromere #kinetochore #chromosome
Nature Chemical Biology (@nchembio) 's Twitter Profile Photo

A Perspective by Stephanie Wankowicz and James Fraser discusses ways macromolecules use conformational entropy to control binding, catalysis, and allostery nature.com/articles/s4158…

Physical Review Research (@physrevresearch) 's Twitter Profile Photo

How cells wrap around coronavirus-like particles using extracellular filamentous protein structures, Sarthak Gupta et al Sarthak Gupta, Ali Patteson phd, Syracuse University Physics #SolidMechanics #Biophysics go.aps.org/3YlGUbG

bioRxiv Cell Biology (@biorxiv_cellbio) 's Twitter Profile Photo

TMEM170 family proteins are lipid scramblases that physically associate with bridge lipid transporters BLTP1/Csf1 biorxiv.org/content/10.110… #biorxiv_cellbio

eLife - the journal (@elife) 's Twitter Profile Photo

How do powerful HIV antibodies bind both virus and membrane? Multi-scale simulations reveal the role of lipid interactions in neutralisation and what it means for vaccine design. elifesciences.org/articles/90139…

Volodymyr Nechyporuk-Zloy (@vnzloy) 's Twitter Profile Photo

High-Speed Multiplexed DNA-PAINT Imaging of Nuclear Organization Using an Expanded Sequence Repertoire Abhinav Banerjee et al. doi.org/10.1101/2024.1…

High-Speed Multiplexed DNA-PAINT Imaging of Nuclear Organization Using an Expanded Sequence Repertoire
Abhinav Banerjee et al.
doi.org/10.1101/2024.1…
bioRxiv Biophysics (@biorxiv_biophys) 's Twitter Profile Photo

Helfrich Monte Carlo Flexible Fitting: physics-based, data-driven cell-scale simulations biorxiv.org/content/10.110… #biorxiv_biophys