Bin2cell reconstructs cells from high resolution Visium HD data biorxiv.org/cgi/content/sh… #bioRxiv

Bin2cell reconstructs cells from high resolution Visium HD data🫶 biorxiv.org/content/10.110…

Thank you to my examiners Prof Bobola and Prof Mallat_Lab , my partner in crime Kazumasa Kanemaru , and Sarah Teichlab for being a fantastic supervisor. 🙏 Looking forward to lots of discoveries in the future 🧬🫀

🔥Visium RTL Probe Design Tool 😍!! + #VisiumHD Analysis 👍 from Teichlab biorxiv.org/content/10.110…

Congrats Krzysztof Polanski Nadav Yayon Raquel Bartolomé-Casado Ioannis Sarropoulos Chuan Xu, Nick England JahnsenLab for developping #Bin2Cell!!! We hope that this will be useful for the #SpatialTranscriptomics community to analyse #visiumHD data 10x Genomics Wellcome Sanger Institute Chan Zuckerberg Initiative Cambridge Stem Cell Institute

Starting with VisiumHD data analysis? Check out Bin2Cell ! Teichlab Nadav Yayon

Our study on severe #COVID19 in end stage kidney disease patients with matched pre-pandemic samples from a broad cohort of 61 individuals is on medRxiv! medrxiv.org/content/10.110…

#Bin2cell reconstructs cells from high resolution #VisiumHD data #SpatialTranscriptomics Transforming #VisiumHD matrix into Single-Cell Spatial data😎 using 2 μm bins (instead of 8 μm) & StarDist segmentation (H&E Nuclei detection + expansion + fluorescence model-based salvage

This is now published in iScience - cell.com/iscience/fullt… Just a small (n=2) but very unique evidence that a single, neurotypically organized, auditory cortex suffices for typical function. Ben Lipkin (co-first) Dr. Dana Boebinger Alexander Paunov Hope Kean Sam Norman-Haignere Ev (like in 'evidence', not Eve) Fedorenko 🇺🇦

very nice summary of two very interesting preprints on fetal human heart gene expression, by my UCSF Anesthesia and Perioperative Care colleague Irfan Kathiriya. In Development preLights journals.biologists.com/dev/article/15…

I made a new version of Fiji's Script Editor that supports #AIassisted macro coding using Anthropic's #claude and OpenAI's #GPT. Read more about how you can try it out: forum.image.sc/t/ai-assisted-…

Who was Hersh GoPo (Goldberg-Polin) to me? Shortly after we moved to Skokie in 2009, we went to Timber Ridge Park one Shabbat afternoon, where many of the Orthodox families gathered to watch the kids play This cute kid with a thick head of black hair and thick glasses

🌟 I am thrilled to share that our perspective article on Molecular Connectomics, co-authored with Nadav Yayon, Kerstin Meyer, and Sarah Teichmann Teichlab FMedSci FRS, has been accepted for publication in PLOS Biology. 1/n

Please have a look at our perspective article on Molecular Connectomics! By Stathis Megas Nadav Yayon Kerstin Meyer now available PLOS Biology