The white paper on “Harmonizing the Generation and Pre-publication Stewardship of FAIR Image Data” coordinated by BioImaging North America, in collaboration with members of the bioimaging community from across the world 🌎🌍🌏, is available now! 👀 Check it out! 🔬 arxiv.org/abs/2401.13022

Hello naparistas! We are proud/relieved to announce the release of napari 0.4.19! 😅🥳 Back in August Grzegorz Bokota was like “I think we should make a quick bug-fix release post 0.4.18”… 6 months later… 😅 #FOSS #OpenSource

Curious about contributing to napari? Core developer Wouter-Michiel Vierdag is leading our all-new napari code cafés! (™️) The first one is this Wednesday at 8pm CET (Paris) time. Improve our screenshots to be pixel perfect, or turn your own idea into reality! Details: forum.image.sc/t/napari-code-…

Excited that SpatialData is out Nature Methods! With Oliver Stegle & Josh Moore labs, we introduce & implement a dataframework & fileformat for multimodal spatial omics, based on the openmicroscopy standard. Read at nature.com/articles/s4159… & try here spatialdata.scverse.org.

1/7 Here is a technical update for the latest release of the #SpatialData package from last week. We thank the core developers and contributors for helping us refine the framework, and the users for the precious feedback and discussions. GitHub repository: github.com/scverse/spatia…

Excited to announce the first #scverse conference! Looking forward to meeting the community of users and developers 😊

Prachee Avasthi Project Jupyter Binder Team And to be clear this isn't just Project Jupyter , the whole scientific python ecosystem is in an even more brittle state. There are millions of dollars flowing into research/education efforts that *use* them, but almost nothing flowing to the projects themselves.

Announcing our new and stable release of Segment Anything for Microscopy! We introduce new features and improve the tool to segment microscopy data with a few clicks, like the mitochondria in the video, first segmented automatically and then corrected interactively.

6 years ago to the minute 🥳🎂, napari co-founder Loïc A. Royer 💻🔬⚗️ made the 1st commit to the “napari-core” repo. github.com/napari/napari-… Since then, over 150 community members have contributed to the napari code, docs, & tooling, and over 400 plugins have been developed. #napariAt6

We celebrate the end of our three-day 🚀hackathon🚀 on spatial omics tools and methods in #Ghent #Belgium. A big thanks to all of the researchers across Europe. Check out our final slide deck and code! docs.google.com/presentation/d… github.com/saeyslab/VIB_H… #SpatialOmics24

Is your science method reductionist or holistic? 💻👩‍🔬🧬 While current cross-species comparison of scRNA-seq data methods are reductional, we explored how a holistic view can tell us more by examining the implicit hypothesis and using Knowledge Graphs ⬇️ t.ly/bty7R

🚨 Attention all naparistas! 🚨 Announcing napari 0.5.0a4 pre-release! 🚀 napari.org/dev/release/re… 🧵👇

Just a reminder that I will be hosting a napari code cafe today at 7pm CET. For the link, please see the forum.image.sc (forum.image.sc/t/napari-code-…) post (not allowed to post the particular zoom link here).

Join the 3rd Get Your Brain Together Hackathon to advance #OMEZarr spatial transformations! Fri., July 26th - Sun., July 28th, 2024 Registration free! Hybrid event at UNC-Chapel Hill via Google Meet, bit.ly/imagesc-island, & bit.ly/imagesc-chat zarr.dev/blog/get-your-…

Kicking off soon our new webinar series, "Advances in Spatial Omics: Exploring Concepts, Innovations, and Resources"! Registration is free but essential for each webinar you wish to join: ebi.ac.uk/training/searc… #bioinformatics #DataScience #SpatialOmics #singlecell #OpenAccess

The recording for today's webinar will soon be available from EMBL-EBI Training. Meanwhile here are the notebooks 🤓 github.com/PMBio/spatiald… Thanks again for inviting me and Wouter-Michiel Vierdag, and thanks to the scverse for the collaborative effort in preparing the notebook.