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Very excited! Looking forward to joining Rutgers SPH.

A BIG thanks to Jessica's group!

Hope this tool can assist scRNA-seq experimental design.

Starfish enterprise: finding RNA patterns in single cells nature.com/articles/d4158…

Our work is finally out Genome Research! Our computational and experimental analyses consistently show the high precision of AIDE to reconstruct full-length mRNA isoforms. I'd like to say THANK YOU to my advisor Jingyi Jessica Li (李婧翌) and collaborators, Hubing Shi and Xin Tong. Rutgers SPH

"... analysis of sister cells also reveals cells to have intrinsic fate biases not detectable by single-cell RNA sequencing"

gave an updated zoom talk on "Learning from 26,000 COVID-19 cases in Wuhan" at the Broad Institute on Friday, March 20. Here is the recording. It provides several updated take home messages and priorities. A summary is given below. youtube.com/watch?v=aQ9KIO…

🌍International students are integral members of our community, enhancing and enriching our learning environment by infusing global perspectives and knowledge into our classrooms. Rutgers SPH will continue to support, protect, and advocate for international students! #RUGlobal

scDesign2: from Tianyi Sun, Dongyuan Song, Wei Vivian Li, Jingyi Jessica Li (李婧翌), a simulator for single-cell RNA-seq data. It is trained on real data, and captures gene correlations present in the real data. It can vary cell number and sequencing depth. genomebiology.biomedcentral.com/articles/10.11…

Great opportunity to join our faculty as instructor or assistant professor of epidemiology! Rutgers SPH #epitwitter jobs.rutgers.edu/postings/134406

ruochenj, Wei Vivian Li and Jingyi Jessica Li (李婧翌) describe mbImpute, an imputation method designed for microbiome data that identifies and corrects the zeros that are unlikely biological in microbiome taxon count data bit.ly/3y73MMw

The scLink R package is now available on both CRAN cran.rstudio.com/web/packages/s… and Github github.com/Vivianstats/sc…

📢Fall instructor needed for new #RutgersSPH doctoral seminar on #PublicHealth surveillance in leadership & practice. Online classes held on Tues. from 630-830pm ET. Teach from anywhere w/ good broadband! 📩Contact Dr. Emily S Barrett & mudblood for more! #EpiTwitter #HigherEdJobs

Li, Nan, Yang & co present SCAPTURE, to identify polyadenylation sites in 3' tag based single cell RNA-seq data, based around DeepPASS neural network. When applied to PBMC data, it finds differential polyA use in patients infected with SARS-CoV-2 genomebiology.biomedcentral.com/articles/10.11…

Our collaborative work with Bin Tian has just been published in Genome Biology ! MAAPER works with both bulk and single-cell sequencing data, and paired or unpaired experimental designs. The R package is available at github.com/Vivianstats/MA…. Any feedback is welcome!

Very happy to announce that #tidyseurat our second chapter of #tidyTranscriptomics is now public at Bioinformatics! doi.org/10.1093/bioinf… We also managed to include a nice cheatsheet in the article ;)

Feature selection benchmarking for scRNA-seq doi.org/10.1093/bib/bb… from Wei Vivian Li #genomics #singlecell . Scry (R package: doi.org/doi:10.18129/B… ) did pretty well!

I am super excited and honored to receive the R35 MIRA award, which will support our work on multi-scale analysis of single-cell transcriptomes. Thank you @NIGMS for this grant for early-stage investigators! Huge thanks to my mentors and colleagues at and outside of Rutgers SPH!

Qian, Wei Vivian Li & co present scINSIGHT, for modeling and interpreting single-cell RNA-seq data from biologically heterogeneous sources, allowing comparison between samples and conditions, based on joint matrix factorization. genomebiology.biomedcentral.com/articles/10.11…

📌#RUGivingDay is here! Help #RutgersSPH raise money for its scholarship fund - which provides support for students focused on areas like urban, maternal child, and LGBTQ+ health, and environmental health & justice - by giving, sharing, and participating! go.rutgers.edu/cawirlj8