📢We are hiring! I am searching for an administrative assistant to be primarly asssociated to my team "Machine Learning for Integrative Genomics" (research.pasteur.fr/en/team/machin…) Institut Pasteur, since 1887 For all details on the offer ➡️emploi.pasteur.fr/job/emploi-ass…

Looking for a postdoc to join my team Institut Pasteur, since 1887 CNRS 🌍 PRAIRIE Institute. The candidate will develop machine learning methods for single-cell omics data. Project funded by the #ERCStG MULTI-viewCELL

A great paper to read, and an amazing tool to use if you have unpaired multi-omics data to integrate 🤩 Congrats for this amazing work Jules !

Finally out a new paper from the lab lead by Remi Trimbour "Molecular mechanisms reconstruction from single-cell multi-omics data with HuMMuS" doi.org/10.1093/bioinf… #singlecell #multilayernetworks

If you like MISTy doi.org/10.1186/s13059…, you'll really like Kasumi doi.org/10.1101/2024.0…. Kasumi is a multi-view explainable representation learning approach, capturing localized relationship-based patterns in tissues across conditions aiming towards facilitating translation

Writing this piece has been quite fulfilling (and scary). I spent half of last year putting in order some of my thoughts regarding how to study multicellular coordination with single-cell and spatial data. If you are interested please read the manuscript below. 😊

When I started this project as part of my master's programme, I didn't think I'd ever see it in press, but here we are! Very happy to share this work (now peer-reviewed) with you, big thanks to Julio Saez-Rodriguez Martín Garrido Rordríguez-Córdoba + rest of coauthors for their support and contributions

🎉 New preprint! biorxiv.org/content/10.110… STORIES learns a differentiation potential from spatial transcriptomics profiled at several time points using Fused Gromov-Wasserstein, an extension of Optimal Transport. Gabriel Peyré @LauCan88

🚨🚨 AI in Bio release 🧬  Very happy to share my work on a Large Cell Model for Gene Network Inference. It is for now just a preprint and more is to come. We are asking the question: “What can 50M cells tell us about gene networks?” ❓Behind it, other questions arose like:

After a very constructive back and forth with editors and reviewers of Nature Communications, scConfluence has now been published @LauCan88 Gabriel Peyré ! I'll present it this afternoon at the poster session of ECCB2026 Geneva, Switzerland (P296) Published version: nature.com/articles/s4146…

I had the opportunity to present #HuMMuS at ECCB2026 Geneva, Switzerland — amazing experience! Huge thanks to the organisers for their formidable job. 🫶 And special mention for the food and fresh hummus! Perfectly on-point snack reminder 😋🧆

Our work with Lucas Schirmer in multiple sclerosis (MS) is out today in Nature Neuroscience. We investigated lesion progression and cell-cell communication events in MS using snRNA-seq and spatial transcriptomics 🧠 See below ⬇️ nature.com/articles/s4159…

What are the key disrupted multicellular processes in heart failure? In our new work we combine 23 years of molecular data with recent single-cell atlases to draw a cross-study patient map. How did we navigate the heart failure space? 🧵⬇️ doi.org/10.1101/2024.1…