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SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification biorxiv.org/cgi/content/sh… #biorxiv_cellbio

If you use SpotMAX, do not hesitate to contact us for any issues, questions, or feedback you might have! GitHub: github.com/SchmollerLab/S… Documentation: spotmax.readthedocs.io/en/latest/ Preprint: shorturl.at/EQHJA Ground-truth dataset: shorturl.at/e6r3R

Oh, wow!Another #PrePrintAlert! Congratulations to Francesco Padovani, his supervisor Kurt Schmoller & col. from IFE at Epigenetics Helmholtz Munich | @HelmholtzMunich!! A great #researchtool is now freely available to quantify spots from your #microscope #imaging. Read the fantastic 🧵from 1st author

📢 JOB ALERT: Tvardovskiy Lab at Penn Epigenetics is hiring at all levels! Interested in chromatin biology, quantitative proteomics, or epigenetic modifications? Learn more about our research and apply at tvardovskiylab.org Please RT

🎉One of our successful #epigenetics postdocs, Andrey Tvardovskiy, is opening his own lab at Penn! 🚨And he IS HIRING! Visit his lab website Penn Epigenetics: tvardovskiylab.org & stay tuned for upcoming #academicpositions at all levels. Congratulations & best of luck, Andrey!

SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification Francesco Padovani et al doi: doi.org/10.1101/2024.1…

I am very happy to announce that I will be joining Helmholtz Munich | @HelmholtzMunich as a group leader from January 2025. Looking very much forward to work with my new colleagues on Ferroptosis and mitochondria #ERCStg European Research Council (ERC) The Conrad Lab Fabiana Perocchi Kurt Schmoller Natalie Krahmer

While you could already use BioImage IO models in SpotMAX, by becoming a partner we commit to contribute with our pre-trained models, tutorials, etc. If you don't know what #SpotMAX is you can catch up on my previous Twitter thread here x.com/frank_pado/sta…

To leverage the breathtaking progress of AI approaches for experimental biology, we need to bridge the gap between conceptual method development and application in real-life image analysis. We are happy to now be part of the great BioImage.IO initiative with SpotMAX Francesco Padovani

The boss in action at the 6th Munich Yeast Meeting!✨️ Thanks to Kurt Schmoller and @HamperlLab for organising such a great meeting! #Yeast #Mitochondria

Cell size matters, and it's a major regulator of cell function. Kurt Schmoller reviews size control strategies of eukaryotic cells & the intricate link of cell size to intracellular biomolecular scaling, organelle homeostasis, cell cycle progression. 🔬ow.ly/k5Sa50U9ZQx

Best end to the incredible PhD journey! So proud, and grateful to everyone involved along the way!

Seeing mitochondrial network on a lot of yeast cells on the cover of a prestigious journal makes me very happy 😎

Our preprint list is now up on FocalPlane. This week we focus on research in #bioimageanalysis. Drop us a message if we’re missing any preprints that you’ve been reading or writing! focalplane.biologists.com/2024/11/29/mic…

🚨 New segmentation model alert! 🚨🥳 You can finally use InstanSeg in our #BioImageAnalysis software #CellACDC! InstanSeg is a fast and multi-channel cell segmentation model by Pete Bankhead, Thibaut Goldsborough, & co. The multi-channel ability is very interesting!

mt-Kaede-HI-NESS ShuttLab is such an amazing reporter for mitochondrial DNA, and it works beautifully in budding yeast too! Check out the updated preprint to learn more: doi.org/10.1101/2023.1… Francesco Padovani AlissaF

It really does work amazingly!

Finally, through collaborations, we show that the reporter works in budding yeast (with Francesco Padovani Francesco Padovani in Kurt Schmoller's lab Kurt Schmoller) and in Drosophila (Mashiat again, with help from Abhi Sharma in Savraj Grewal's lab @SavrajGrewal).