SQANTI3 release alert🚨 Are you a SQANTI3 user? Go ahead and update your installation to v5.2.2, our newest release includes bug fixes, updates and improvements in classification of monoexons, genic introns, NIC and genic categories. Don't miss the update! github.com/ConesaLab/SQAN…

📢 New positions Conesa Lab . Seeking enthusiastic graduates/postdocs in #ComputationalBiology to join our new @oscars_eu funded project for long-reads driven annotation of #biodiversity genomes. Also incorporating a postdoc to set up our new wet lab. See conesalab.org/join-our-lab/

New position alert🚨!! are you a graduate or postdoc in #ComputationalBiology? Are you interested in long-reads and genome annotation? Come and join the Conesa Lab on our @oscars_eu project! You can find more info here: conesalab.org/join-our-lab/

Big congratulations to Carlos on his outstanding Master's thesis defense! 🎉 He worked with @CarolMonzo, Alejandro and AnaConesa at the Conesa Lab, studying technical noise and biases in long-reads data 🎓 #SQANTI3

Caught in the act!! @ClaraBiologist and Fabián working hard at the Conesa Lab! Deep in LongTREC project management and BCBHubCSIC software support I2SysBio 🤙

Very happy to present today PhysiBoSS 2.0 at ECCB2026 Geneva, Switzerland in beautiful Turku! One more step towards having human digital twins from SysBioCurie Institut Curie, AlfonsoValencia alfonsovalencia.bsky.social BSC-CNS and I2SysBio. More info on the paper here: nature.com/articles/s4154…

If you liked #SQANTI, you're gonna love our latest #SQANTI-reads to support raw-long-read QC in multi-sample experiments. Detect outliers, find biases, and assess discovery power in your LRS dataset. Great collaboration with Lauren M McIntyre team. Preprint biorxiv.org/content/10.110…

Super proud to be part of this amazing team! 💪 We pushed through and submitted our lrRNA-seq review to NRG just in time. Huge thanks to the BIG BOSS of the paper: @CarolMonzo, and of course Ana AnaConesa for the guidance and supervision. Now time to work on the new paper!

Enjoying networking at #LRUA24 and imagining new excited long-read questions with Winston Winston Timp, Logan Moran and Tianyuan Liu LongTREC francesco nicassio Adam Ameur

Make your #LongReads structural categories easily understandable for the community! Color them CORRECTLY 🙏 FSM=#6BAED6, ISM=#FC8D59, NIC=#78C679, NNC=#EE6A50, Genic Genomic=#969696, Antisense=#66C2A4 Fusion=goldenrod1, Intergenic=darksalmon, Genic Intron=#41B6C4 🫶🫰

#LRUA24 LongTREC

#LRUA24 has come to an end!🧬 Three days of incredible science and lots of fun. Huge thanks to all speakers, participants, and sponsors. Hope to see you back in Uppsala 2026!

LongTREC

Cool idea of universal single-isoform genes (BUGSI) to assess RNA data as part of the SQANTI ecosystem. A great talk by AnaConesa Conesa Lab at #cshldata24 SQANTI-Sim: link.springer.com/article/10.118… #biodata24 SQANTI3 for quality control long-read transcriptome github.com/ConesaLab/SQAN…

Had an amazing marathon with Wouter 🏃‍♂️, who’s doing fantastic work on the LongTREC LRGASP platform under AnaConesa supervision and with my guidance in Conesa Lab —a cutting-edge benchmarking platform advancing long-read transcriptomics!

The Conesa Lab is seeking to join motivated Postdocs through the #JuanDeLaCierva from Agencia Estatal de Investigación tinyurl.com/32acz58 and #CIAPOS from GVA Educació tinyurl.com/bmrex8cc Contact us ASPA if interested in long-read, single-cell or spatial transcriptomics and multi-omics.

Novel seminar tutorial series from BCBHubCSIC putting the accent on scientific software! 🧬12 months, 24 tools! Do not miss any and discover CSIC #bioinformatics resources explained by their developers!!! SEBiBC INB / ELIXIR-ES HiTSeq 2024 ISCB News

Thrilled to share my first review in Nature Genetics with my supervisor AnaConesa: “Profiling the epigenome using long-read sequencing” under Marie Skłodowska-Curie Actions! We highlight how #LongReadSeq reveals new insights into DNA methylation & chromatin states. Read here: doi.org/10.1038/s41588…

Proud of Conesa Lab and Marie Skłodowska-Curie Actions LongTREC amazing doctoral candidate Tianyuan Liu for this timely and comprehensive review on how #LongReadSequencing can profile the epigenome to reveal complex chromatin states. Published today in Nature Genetics. nature.com/articles/s4158…

Thrilled to share our #longTREC visit to the Barcelona Supercomputing Center! We had an incredible tour of #MareNostrum5, currently ranked as the 8th most powerful supercomputer in the world. What an inspiring glimpse into the future of AI and research! Marie Skłodowska-Curie Actions