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Timeline cleanse 🦉 owlsintowels.org

Benchmarking 13 tools for mutational signature attribution, including a new and improved algorithm biorxiv.org/content/10.110… #rstats pkg github.com/steverozen/mSi… 🧬🖥️

Terminal Genome Viewer (tgv), written in Rust github.com/zeqianli/tgv

R Weekly 2025-W22 Writing a book with Quarto, clean R code, when good pseudorandom numbers go bad rweekly.org/2025-W22.html #Rstats

Precise estimation of in-depth relatedness in biobank-scale datasets using deepKin cell.com/cell-reports-m… 🧬🖥️🧪 #Rstats pkg github.com/qixininin/deep…

Kaminari: a resource-frugal index for approximate colored k-mer queries biorxiv.org/content/10.110… 🧬🖥️🧪 github.com/yhhshb/kaminari

A Cooper’s hawk... learned how to adapt its hunting strategy and strike at a flock of birds precisely when cars at an intersection lined up after traffic lights switched to red, ... alerted by a sound signal that the red phase would last longer than usual. frontiersin.org/news/2025/05/2…

nf-core/marsseq: systematic preprocessing pipeline for MARS-seq experiments [in Nextflow] academic.oup.com/bioinformatics… 🧬🖥️🧪 github.com/nf-core/marsseq

Steering Generative Models with Experimental Data for Protein Fitness Optimization arxiv.org/abs/2505.15093 🧬🖥️🧪 github.com/jsunn-y/SGPO

The Colossal Foundation Partners With the Samoa Conservation Society to Find the Critically Endangered Tooth-Billed Pigeon Through Advanced Bioacoustic Technologies dlvr.it/TL2vcm

A bioacoustics algorithm is helping conservationists locate the tooth-billed pigeon. mashable.com/article/coloss…

AdDeam: A Fast and Scalable Tool for Estimating and Clustering Reference-Level Damage Profiles biorxiv.org/content/10.110… 🧬🖥️🧪 github.com/LouisPwr/AdDeam

Language model generates cis-regulatory elements across prokaryotes biorxiv.org/content/10.110…

If you care about writing well (and if you're a scientist of any stripe from IC to CEO I'd put writing in your top 3 most important skills) The Craft of Writing Effectively lecture from Larry McEnerney (director of U Chicago's Writing Program) is 💯 youtube.com/watch?v=vtIzMa…

US CBP storing DNA from 133,000 migrant children and uploaded into the CODIS national criminal database wired.com/story/cbp-dna-… ...I worked in forensic genomics for a few years before Colossal. This is dystopian, and probably illegal.

SNP calling, haplotype phasing and allele-specific analysis with long RNA-seq reads biorxiv.org/content/10.110… 🧬🖥️🧪 longcallR: github.com/huangnengCSU/l… Nextflow workflow: github.com/huangnengCSU/l…

The pivot penalty in research nature.com/articles/s4158… 🧬🖥️🧪

Predicting expression-altering promoter mutations with deep learning science.org/doi/10.1126/sc… 🧬🖥️🧪 github.com/Illumina/Promo…

Cross-comparison of gut metagenomic profiling strategies nature.com/articles/s4200… 🧬🖥️ #rstats minitax: Versatile Taxonomic Assignment Tool for Metagenomic Reads Using minimap2 github.com/Balays/minitax

TIL about dplyr's pick() function: dplyr.tidyverse.org/reference/pick…