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New lab paper together with Sysbiomed. Great collaboration, providing new cues on the germline component of inter individual variation in drug response.

New lab paper is up. StructLMM is a method to jointly test for genotype-environment interactions using tens or hundreds of exposures. Yields new GxE signals for BMI and gene expression traits. By @rachelmoo and ⁦Paolo Casale⁩ with Barroso lab at Sanger. nature.com/articles/s4158…

We are recruiting for an MRC Programme Leader at Director of Research level, in Statistical Methodology for Systems Omics #statistics #recruiting MRC Biostatistics Unit Cambridge University. Deadline for applications: 25th March jobs.cam.ac.uk/job/20465/

New Paper up! Great multi-lab team effort with gagneurlab Anshul Kundaje (anshulkundaje@bluesky) to establish a repository of ML models in genomics.Give Kipoi a go!Large collection of ready-to-use models to predict molecular outputs from splicing to TF binding and more! nature.com/articles/s4158…

New lab paper up. Work by Britta Velten @brittavelten.bsky.social. We married up GPs with sparse factor analysis, which turns out to be a great fit for dealing with spatio-temporal data.

Two papers up in @NatGenet on the same day! 1) Population-scale single-cell RNA-seq profiling across neuron differentiation go.nature.com/3rifukq 2) Identification of regulatory variants in pluripotent cells using population-scale transcriptomics go.nature.com/3ru6o3W

Join our team! We are seeking a postdoctoral researcher! 🚀 Are you enthusiastic about using machine learning to decode the intricate world of cancer evolution? Join our collaborative project with @odom_lab at the DKFZ. Apply now: jobs.dkfz.de/en/jobs/166489…

We are seeking a postdoctoral researcher at @EMBL!! 🦸‍♀️ Are you passionate about applying machine learning to unravel the causal mechanisms of gene regulation? Apply now: embl.org/jobs/position/…

Two wheels, one method to infer causality in biological networks: Bicycle! 🚲 Thrilled to share our team's breakthrough. Dive into the details in the thread below 👇

One framework to rule them all: SpatialData 🔳 Excited to see our efforts in unifying and integrating multimodal spatial omics data highlighted by EMBL. Phenomenal teamwork with Fabian Theis and Josh Moore and more! 💪 Published in Nature Methods: nature.com/articles/s4159……

🌟 Be part of our team! Join our lab for a postdoc in computational biology, focused on multi-omics profiling in time and space. Apply now: embl.org/jobs/position/…

#CHOCOLAT_G2P 🍫🐭 is available as a preprint! Our collaborative project on tumor spatial genomics, showcases a new technology enabling induction and spatial genotyping/phenotyping of hundreds of tumors in mouse liver. Check out the thread for the nuts and bolts of 🍫-G2P!

Congratulation, Eva!

Do you want to pursue a PhD at the intersection of AI and the life sciences? 🤖🧬 We are recruiting through the HIDSS4Health program! Join an exciting project on multi-omics factorization models for personalized medicine with Junyan Lu. Apply here: hidss4health.de/#apply

Apply now for the DKFZ #Postdoc|toral Fellowships at the German #Cancer Research Center, covering all areas of #cancerresearch, including #epigenetics, #genomics, #stemcells, #radiooncology, #epidemiology. To apply for your #PostdocFellowship visit ➡️ t1p.de/4t3fp

Amazing work from our #DeepRVAT team! Using AI to predict the effects of rare variants, pushing the boundaries of personalised medicine. 🧬🔍 Check out the thread and explore their exciting results yourself!

We are looking for a postdoctoral researcher! Join our translational project aimed at exploring the processes that alter the epigenetic landscape of colorectal cancer cells and drive their metastasis. Become part of our group at @EMBL Apply here: embl.org/jobs/position/…

Our paper on using machine learning to predict the impact of rare genetic variants is out! #DeepRVAT utilizes a fully data-driven approach to analyze annotated variants. DKFZ press release: dkfz.de/en/presse/pres……Publication in Nature Genetics: nature.com/articles/s4158…

Paper on interpretable and sparse factor analysis for scRNA-seq is up. Generalises scLVM; software for R & python! genomebiology.biomedcentral.com/articles/10.11…